37861 (RPN3) Rpn3_C
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37861 chr_17 (RPN3) Rpn3_C 387597 393529 - Rpn3_C

Synonyms

NCBI ID Ensembl Genomes exon ID
7444225 Thaps37861.2, Thaps37861.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

26706

(PSA7) proteasome_alpha_type_7
0.9207

16295

FBPase
0.9164

40483

(PSA4) Ntn_hydrolase superfamily
0.9153

13393

PLN02321
0.9114

37118

FeThRed_B
0.9112

11068

(PSA6) proteasome_alpha_type_6
0.9061

269624

TIM_phosphate_binding superfamily
0.9046

264556

FBPase
0.904

516

(RPT5) RPT1
0.8972

35136

NA
0.8935

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rpn3_C superfamily Proteasome regulatory subunit C-terminal; This eukaryotic domain is found at the C-terminus of 26S... - 79.6766 3.30E-19 255 - 324 superfamily 149439
Rpn3_C superfamily Proteasome regulatory subunit C-terminal; This eukaryotic domain is found at the C-terminus of 26S... - 79.6766 3.30E-19 255 - 324 superfamily 149439
PCI PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). cl02111 79.968 5.79E-19 148 - 252 specific 250589
PCI superfamily PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). - 79.968 5.79E-19 148 - 252 superfamily 261183

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9320 PHATRDRAFT_9320 215254 321825 463036 Cre06.g275650.t1.2 AT1G20200.1 371796

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

Not available -

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