37965 S1_like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
37965	chr_17	S1_like superfamily	252636	254752	-	S1_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444198	Thaps37965.2, Thaps37965.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0272	0.25	4.6 32

Most Highly Correlated Transcripts

36434 DUF1253 0.94	27873 PLN02274 0.9338	261462 hypothetical protein 0.933	2772 Utp14 0.9292	32395 RNA_pol 0.9202	11949 Nop14 0.9197
22582 S1 0.9174	261746 PRK00142 0.9162	3583 PRK13796 0.9144	23079 zf-LYAR 0.9135

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	70.8213	6.57E-15	96 - 150	superfamily	263921

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_15354	PHATRDRAFT_15354	175658	181227	209862	Cre10.g428750.t1.1	AT3G11964.1	490560

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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