38306 Chloroa_b-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38306 chr_19b_31 Chloroa_b-bind 39778 40446 - Chloroa_b-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps38306.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0014

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0185
 0.25

Most Highly Correlated Transcripts

38306

Chloroa_b-bind
1

ThpsCp051

(psbK) photosystem II protein K
0.9505

8248

HopJ superfamily
0.9375

ThpsCp068

(psaL) photosystem I subunit XI
0.9332

21821

hypothetical protein
0.9329

33566

(TPP1) sigpep_I_bact
0.9328

270281

hypothetical protein
0.9327

3326

TauD
0.9304

bd2088

(bd2088) rbcL
0.9288

38924

PLN02627
0.9287

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Chloroa_b-bind Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. cl02879 102 3.42E-27 65 - 204 specific 249913
Chloroa_b-bind superfamily Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. - 102 3.42E-27 65 - 204 superfamily 261492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_32294 PHATRDRAFT_32294 223513 234364 364696 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009765 GO:0016020 -

GO:0009765

photosynthesis, light harvesting

Details: 
Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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