38964 Chorismate_synthaseThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38964	chr_1	Chorismate_synthase	306859	308249	-	Chorismate_synthase

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps38964.2, Thaps38964.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0054

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0246	0.41	0.00038 0.0025

Most Highly Correlated Transcripts

20607 hypothetical protein 0.9949	1770 hypothetical protein 0.9251	16193 S49_Sppa_N_C 0.9229	3588 hypothetical protein 0.9224	270386 hypothetical protein 0.9193	5105 hypothetical protein 0.9151
25960 PLN02853 0.9146	9511 adk 0.9139	4604 hypothetical protein 0.9116	22770 PLN02908 0.9105

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chorismate_synthase		Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Chorismate...	cl00323	563.965	0	35 - 382	specific	143612
Chorismate_synthase superfamily		Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Chorismate...	-	563.965	0	35 - 382	superfamily	260354

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43429	PHATRDRAFT_43429	202541	199105	453474	Cre03.g145747.t1.1	AT1G48850.1	497112

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004107 GO:0009073 -

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