39847 (APM2) AP-2_Mu2_CtermThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
39847	chr_3	(APM2) AP-2_Mu2_Cterm	725444	727179	-	AP-2_Mu2_Cterm

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441708	Thaps39847.1, Thaps39847.3, Thaps39847.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0212

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0269	0.41	25000 54000

Most Highly Correlated Transcripts

8038 hypothetical protein 0.9192	10059 hypothetical protein 0.9129	3564 hypothetical protein 0.9061	1762 PRA1 superfamily 0.9057	10856 hypothetical protein 0.9041	7505 hypothetical protein 0.9027
6140 hypothetical protein 0.8924	2107 hypothetical protein 0.8918	2515 nst superfamily 0.8916	268857 Peptidase_C14 0.8875

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AP-2_Mu2_Cterm		C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor...	cl10970	452.423	3.92E-159	168 - 425	specific	211362
AP_MHD_Cterm superfamily		C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD); This...	-	452.423	3.92E-159	168 - 425	superfamily	264154

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_18142	PHATRDRAFT_18142	256427	203996	459870	Cre16.g685277.t1.1	AT5G46630.1	317496

KEGG

KEGG description	KEGG Pathway
Endocytosis	map04144

GO Terms

GO:0006886 GO:0030125 -

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