4277 PGAP1 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4277	chr_4	PGAP1 superfamily	626894	629639	-	PGAP1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447485	Thaps4277.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0010

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0125	0.41	0.0014 0.0015

Most Highly Correlated Transcripts

36235 p450 superfamily 0.8689	262279 PT_UbiA_chlorophyll 0.8465	bd1659 (bd1659) ZnMc_pappalysin_like 0.8379	bd1173 (bd1173) S_TKc 0.8376	269147 NAD_binding_8 superfamily 0.8353	bd760 (bd760) ZnMc superfamily 0.8342
264007 NAD_binding_10 0.833	33663 PLN02649 0.8323	574 PRK05444 0.827	32723 Chloroa_b-bind 0.8266

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PGAP1 superfamily		PGAP1-like protein; The sequences found in this family are similar to PGAP1. This is an endoplasmic...	-	109.758	1.24E-26	189 - 469	superfamily	203773

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_46935	PHATR_46935	245478	284211	Not available	Not available	AT3G27325.1	483500

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

Not available -

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