5106 PUB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5106 chr_5 PUB 379332 380832 - PUB

Synonyms

NCBI ID Ensembl Genomes exon ID
7449672 Thaps5106.1, Thaps5106.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0225

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0191
 0.44

Most Highly Correlated Transcripts

23242

PRK00142
0.9096

24180

PhyH
0.909

6020

DUF2088 superfamily
0.8947

5104

hypothetical protein
0.8947

21979

DUF2373 superfamily
0.8909

23209

hypothetical protein
0.8868

268136

COG1054
0.8868

25365

hypothetical protein
0.8865

268027

Met_10
0.8858

269049

hypothetical protein
0.8846

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PUB PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... cl15262 73.5704 5.39E-16 363 - 470 specific 198416
PUB superfamily PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... - 73.5704 5.39E-16 363 - 470 superfamily 265658

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43369 PHATRDRAFT_43369 256655 208968 Not available Not available Not available 545237

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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