5686 RRM_hnRNPH_ESRPs_RBM12_likeThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5686	chr_5	RRM_hnRNPH_ESRPs_RBM12_like	1824103	1825593	-	RRM_hnRNPH_ESRPs_RBM12_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444860	Thaps5686.4, Thaps5686.3, Thaps5686.2, Thaps5686.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0176

Most Highly Correlated Transcripts

13448 Sec1 0.898	35136 NA 0.889	13393 PLN02321 0.8754	31136 Pkinase_Tyr 0.8743	39741 (APM3) AP-3_Mu3_Cterm 0.8733	16114 PLN02350 0.8714
40200 TRX_reduct 0.867	17036 S_TKc 0.8636	25212 hypothetical protein 0.8626	37571 BCDHK_Adom3 0.8619

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_hnRNPH_ESRPs_RBM12_like		RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family,...	cl17169	88.3831	5.94E-22	93 - 160	specific	240700
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	88.3831	5.94E-22	93 - 160	superfamily	266524
RRM_hnRNPH_ESRPs_RBM12_like		RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family,...	cl17169	88.3831	5.94E-22	93 - 160	specific	240700
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	88.3831	5.94E-22	93 - 160	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_10024	PHATRDRAFT_10024	255816	253653	55470	Cre14.g628100.t1.2	AT5G66010.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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