6052 Nop superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6052 chr_6 Nop superfamily 587015 588842 + Nop superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448582 Thaps6052.1, Thaps6052.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0113

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0025
 0.38

Most Highly Correlated Transcripts

25179

(Tp_CCH7) COG5152
0.8953

2145

hypothetical protein
0.893

1470

hypothetical protein
0.8928

8500

PRP38 superfamily
0.8924

5519

hypothetical protein
0.8912

10940

RRM_UHM_SPF45_PUF60
0.8906

11695

hypothetical protein
0.8889

13448

Sec1
0.8868

22407

hypothetical protein
0.8854

3354

hypothetical protein
0.8845

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nop superfamily Putative snoRNA binding domain; This family consists of various Pre RNA processing... - 113.151 1.28E-29 196 - 351 superfamily 250875
Prp31_C superfamily Prp31 C terminal domain; This is the C terminal domain of the pre-mRNA processing factor Prp31.... - 87.7719 1.00E-20 354 - 473 superfamily 255552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
36568 PHATRDRAFT_43576 PHATRDRAFT_43576 201254 320421 427076 Cre10.g424850.t1.2 AT1G60170.1 468703

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

Not available -

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