6068 KH-I
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6068 chr_6 KH-I 632796 636944 + KH-I

Synonyms

NCBI ID Ensembl Genomes exon ID
7443569 Thaps6068.3, Thaps6068.2, Thaps6068.1, Thaps6068.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0472

Most Highly Correlated Transcripts

4862

Bromodomain superfamily
0.9339

22882

PUB
0.9234

22265

hypothetical protein
0.9216

263599

COG3899
0.9142

22928

hypothetical protein
0.9136

25451

AAA superfamily
0.9131

12836

EEP superfamily
0.9125

6292

hypothetical protein
0.9124

20824

hypothetical protein
0.9108

23207

hypothetical protein
0.9105

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... cl17245 63.3479 5.04E-12 658 - 715 specific 238053
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 63.3479 5.04E-12 658 - 715 superfamily 266583

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47861 PHATRDRAFT_47861 242061 17858 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005489 GO:0005506 GO:0006118 GO:0003676 -

GO:0005489

NA

Details: 
NA
GO Category: 
NA

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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