Organism : Desulfovibrio vulgaris Hildenborough | Module List :
DVU0310 fliI
flagellum-specific ATP synthase FliI
Functional Annotations (14)
Function | System |
---|---|
Flagellar biosynthesis/type III secretory pathway ATPase | cog/ cog |
ciliary or flagellar motility | go/ biological_process |
hydrogen-transporting two-sector ATPase activity | go/ molecular_function |
ATP binding | go/ molecular_function |
cytoplasm | go/ cellular_component |
bacterial-type flagellum | go/ cellular_component |
flagellum assembly | go/ biological_process |
protein transport | go/ biological_process |
ATP synthesis coupled proton transport | go/ biological_process |
proton-transporting ATP synthase complex | go/ cellular_component |
hydrogen ion transporting ATP synthase activity, rotational mechanism | go/ molecular_function |
proton-transporting ATPase activity, rotational mechanism | go/ molecular_function |
Flagellar assembly | kegg/ kegg pathway |
fliI_yscN | tigr/ tigrfam |
Regulation information for DVU0310
(Mouseover regulator name to see its description)
Regulator | Module | Operator |
---|---|---|
DVU0309 DVU3220 |
184 | combiner |
DVU1584 DVU0269 |
184 | combiner |
DVU2114 | 184 | tf |
DVU2547 DVU0309 |
184 | combiner |
DVU2547 DVU2989 |
184 | combiner |
DVU2802 DVU0110 |
184 | combiner |
DVU3255 DVU3186 |
184 | combiner |
DVU0309 DVU0621 |
125 | combiner |
DVU0309 DVU2989 |
125 | combiner |
DVU1584 DVU0269 |
125 | combiner |
DVU2423 DVU1419 |
125 | combiner |
DVU2547 DVU0539 |
125 | combiner |
DVU2547 DVU2989 |
125 | combiner |
DVU2802 DVU0539 |
125 | combiner |
DVU3255 DVU1156 |
125 | combiner |
DVU3255 DVU1584 |
125 | combiner |
DVU3255 DVU3186 |
125 | combiner |
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
Click on the RegPredict links to explore the motif in RegPredict.
Motif Id | e-value | Consensus | Motif Logo | RegPredict |
---|---|---|---|---|
241 | 2.10e+01 | cTGcCGGcatccTGcCCgCatCa | RegPredict | |
242 | 4.90e+00 | TC.gcACa.TGcaatagaAagGg | RegPredict | |
351 | 2.20e+00 | catGGaacgttcaTTGCtt | RegPredict | |
352 | 4.10e+03 | AACACaaTGGAATAaAA | RegPredict |
Functional Enrichment for DVU0310
Function | System |
---|---|
Flagellar biosynthesis/type III secretory pathway ATPase | cog/ cog |
ciliary or flagellar motility | go/ biological_process |
hydrogen-transporting two-sector ATPase activity | go/ molecular_function |
ATP binding | go/ molecular_function |
cytoplasm | go/ cellular_component |
bacterial-type flagellum | go/ cellular_component |
flagellum assembly | go/ biological_process |
protein transport | go/ biological_process |
ATP synthesis coupled proton transport | go/ biological_process |
proton-transporting ATP synthase complex | go/ cellular_component |
hydrogen ion transporting ATP synthase activity, rotational mechanism | go/ molecular_function |
proton-transporting ATPase activity, rotational mechanism | go/ molecular_function |
Flagellar assembly | kegg/ kegg pathway |
fliI_yscN | tigr/ tigrfam |
Module neighborhood information for DVU0310
Gene | Common Name | Description | Module membership |
---|---|---|---|
DVU0044 | fliP | flagellar biosynthesis protein FliP | 184, 286 |
DVU0046 | fliN | flagellar motor switch protein FliN | 115, 184 |
DVU0047 | flagellar protein FliL | 184, 298 | |
DVU0310 | fliI | flagellum-specific ATP synthase FliI | 125, 184 |
DVU0311 | flagellar assembly protein FliH | 125, 184 | |
DVU0312 | fliG | flagellar motor switch protein FliG | 125, 184 |
DVU0313 | fliF | flagellar M-ring protein FliF | 125, 184 |
DVU0314 | fliE | flagellar basal body component FliE | 125, 184 |
DVU0315 | flgC | flagellar basal-body rod protein FlgC | 125, 184 |
DVU0409 | hypothetical protein DVU0409 | 22, 184 | |
DVU0512 | flagellar basal-body rod protein | 125, 184 | |
DVU0513 | flgG | flagellar basal body rod protein FlgG | 125, 184 |
DVU0515 | flgH | flagellar basal body L-ring protein | 125, 184 |
DVU0516 | flgI | flagellar basal body P-ring protein | 125, 184 |
DVU0517 | M24/M37 family peptidase | 125, 184 | |
DVU0519 | flagellar hook-associated protein FlgK | 125, 184 | |
DVU0520 | flagellar hook-associated protein FlgL | 22, 184 | |
DVU0521 | csrA | carbon storage regulator | 184, 249 |
DVU0522 | flagellar assembly protein FliW | 184, 208 | |
DVU0858 | lipoprotein | 82, 184 | |
DVU0862 | bifunctional flagellar protein FliS/hypothetical protein | 22, 184 | |
DVU0863 | flagellar hook-associated protein 2 | 22, 184 | |
DVU0913 | hypothetical protein DVU0913 | 125, 184 | |
DVU2211 | hypothetical protein DVU2211 | 103, 184 | |
DVU2232 | hypothetical protein DVU2232 | 125, 184 | |
DVU3001 | hypothetical protein DVU3001 | 22, 184 | |
DVU3003 | radical SAM domain-containing protein | 125, 184 | |
DVU3004 | radical SAM domain-containing protein | 22, 125 | |
DVU3018 | radical SAM domain-containing protein | 125, 184 | |
DVU3019 | radical SAM/B12 binding domain-containing protein | 125, 184 | |
DVU3020 | hypothetical protein DVU3020 | 125, 184 |
Gene Page Help
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVis
Our circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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