Organism : Geobacter sulfurreducens | Module List :
membrane protein (NCBI)
Functional Annotations (1)
|Predicted permease||cog/ cog|
Regulation information for GSU0854(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU0854
|Predicted permease||cog/ cog|
Module neighborhood information for GSU0854
|Gene||Common Name||Description||Module membership|
|GSU0226||GSU0226||L-lactate permease, putative (VIMSS)||126, 164|
|GSU0227||GSU0227||type II DNA modification methyltransferase, putative (NCBI)||164, 253|
|GSU0457||GSU0457||lipoprotein, putative (VIMSS)||125, 164|
|GSU0458||GSU0458||(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, putative (VIMSS)||125, 164|
|GSU0524||GSU0524||conserved hypothetical protein (VIMSS)||47, 164|
|GSU0541||polA||DNA polymerase I (NCBI)||164, 183|
|GSU0716||GSU0716||hypothetical protein (NCBI)||65, 193|
|GSU0818||GSU0818||aldehyde dehydrogenase family protein (VIMSS)||65, 210|
|GSU0841||GSU0841||sigma-54 dependent DNA-binding response regulator (VIMSS)||164, 281|
|GSU0852||GSU0852||lipoprotein, putative (VIMSS)||16, 65|
|GSU0853||GSU0853||CBS domain protein (VIMSS)||65, 253|
|GSU0854||GSU0854||membrane protein (NCBI)||65, 164|
|GSU0858||GSU0858||TonB-dependent receptor, putative (VIMSS)||9, 164|
|GSU0932||uraA||uracil permease (NCBI)||147, 164|
|GSU0934||GSU0934||hypothetical protein (VIMSS)||8, 164|
|GSU0997||mutM||formamidopyrimidine-DNA glycosylase (NCBI)||40, 164|
|GSU1009||hflX||GTP-binding protein (NCBI)||164, 253|
|GSU1297||GSU1297||ISGsu2, transposase (VIMSS)||72, 164|
|GSU1396||GSU1396||hypothetical protein (VIMSS)||65, 208|
|GSU1397||GSU1397||cytochrome c family protein, putative (NCBI)||65, 208|
|GSU1398||GSU1398||SCO1/SenC family protein (VIMSS)||65, 210|
|GSU1562||GSU1562||conserved hypothetical protein TIGR00106 (VIMSS)||164, 253|
|GSU1563||GSU1563||hypothetical protein (VIMSS)||97, 164|
|GSU1613||mutY||A/G-specific adenine glycosylase, putative (NCBI)||25, 65|
|GSU1696||GSU1696||MoxR family protein (VIMSS)||65, 133|
|GSU1949||GSU1949||hypothetical protein (VIMSS)||65, 264|
|GSU1985||GSU1985||outer membrane protein, putative (VIMSS)||65, 247|
|GSU1987||GSU1987||TPR domain protein (VIMSS)||65, 247|
|GSU2100||katG||catalase/peroxidase (NCBI)||65, 321|
|GSU2239||GSU2239||conserved hypothetical protein TIGR00255 (VIMSS)||47, 164|
|GSU2337||GSU2337||glycosyl transferase, group 20 family protein (NCBI)||47, 164|
|GSU2403||GSU2403||hypothetical protein (VIMSS)||65, 97|
|GSU2414||GSU2414||membrane protein, putative (VIMSS)||164, 183|
|GSU2674||GSU2674||hypothetical protein (VIMSS)||164, 323|
|GSU2682||GSU2682||conserved hypothetical protein (VIMSS)||49, 65|
|GSU2683||panE||2-dehydropantoate 2-reductase (VIMSS)||47, 164|
|GSU2735||GSU2735||transcriptional regulator, TetR family (NCBI)||65, 66|
|GSU2736||GSU2736||hypothetical protein (VIMSS)||164, 327|
|GSU2742||GSU2742||hypothetical protein (VIMSS)||65, 193|
|GSU2743||GSU2743||cytochrome c family protein (VIMSS)||65, 193|
|GSU2790||GSU2790||hypothetical protein (VIMSS)||65, 141|
|GSU2791||GSU2791||hypothetical protein (RefSeq)||65, 157|
|GSU2792||GSU2792||conserved hypothetical protein (NCBI)||65, 310|
|GSU2811||hsc||cytochrome c Hsc (NCBI)||65, 195|
|GSU2813||ccpA-2||cytochrome c551 peroxidase (NCBI)||65, 99|
|GSU3049||GSU3049||hypothetical protein (VIMSS)||160, 164|
|GSU3133||GSU3133||penicillin-binding protein, 1A family (VIMSS)||47, 164|
|GSU3147||mobB||molybdopterin-guanine dinucleotide biosynthesis protein MobB (NCBI)||164, 201|
|GSU3188||GSU3188||rubredoxin (VIMSS)||42, 65|
|GSU3314||GSU3314||lipoprotein, putative (VIMSS)||164, 183|
|GSU3371||GSU3371||AP endonuclease, family 2 (NCBI)||47, 164|
|GSU3411||pcrA||ATP-dependent DNA helicase PcrA, putative (NCBI)||164, 281|
|GSU3421||GSU3421||transcriptional regulator, Crp/Fnr family (VIMSS)||126, 164|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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