Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0934(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU0934
|Gene||Common Name||Description||Module membership|
|GSU0085||GSU0085||heterodisulfide reductase, cytochrome reductase subunit (VIMSS)||8, 196|
|GSU0086||GSU0086||hypothetical protein (VIMSS)||8, 323|
|GSU0226||GSU0226||L-lactate permease, putative (VIMSS)||126, 164|
|GSU0227||GSU0227||type II DNA modification methyltransferase, putative (NCBI)||164, 253|
|GSU0289||GSU0289||conserved hypothetical protein (VIMSS)||8, 253|
|GSU0316||GSU0316||hypothetical protein (VIMSS)||8, 191|
|GSU0457||GSU0457||lipoprotein, putative (VIMSS)||125, 164|
|GSU0458||GSU0458||(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, putative (VIMSS)||125, 164|
|GSU0512||GSU0512||conserved hypothetical protein (VIMSS)||8, 278|
|GSU0524||GSU0524||conserved hypothetical protein (VIMSS)||47, 164|
|GSU0541||polA||DNA polymerase I (NCBI)||164, 183|
|GSU0703||GSU0703||hypothetical protein (VIMSS)||8, 129|
|GSU0821||GSU0821||conserved hypothetical protein (VIMSS)||8, 75|
|GSU0841||GSU0841||sigma-54 dependent DNA-binding response regulator (VIMSS)||164, 281|
|GSU0854||GSU0854||membrane protein (NCBI)||65, 164|
|GSU0858||GSU0858||TonB-dependent receptor, putative (VIMSS)||9, 164|
|GSU0879||cheV||chemotaxis protein CheV (NCBI)||8, 212|
|GSU0932||uraA||uracil permease (NCBI)||147, 164|
|GSU0934||GSU0934||hypothetical protein (VIMSS)||8, 164|
|GSU0997||mutM||formamidopyrimidine-DNA glycosylase (NCBI)||40, 164|
|GSU1009||hflX||GTP-binding protein (NCBI)||164, 253|
|GSU1048||GSU1048||SEC-C motif domain protein (VIMSS)||8, 47|
|GSU1216||cydC||transport ATP-binding protein CydC (NCBI)||8, 181|
|GSU1287||GSU1287||methyl accepting chemotaxis protein, putative (VIMSS)||8, 131|
|GSU1297||GSU1297||ISGsu2, transposase (VIMSS)||72, 164|
|GSU1311||glk||glucose-6-phosphate isomerase (NCBI)||8, 205|
|GSU1544||GSU1544||hypothetical protein (VIMSS)||8, 105|
|GSU1562||GSU1562||conserved hypothetical protein TIGR00106 (VIMSS)||164, 253|
|GSU1563||GSU1563||hypothetical protein (VIMSS)||97, 164|
|GSU1657||GSU1657||DNA internalization-related competence protein ComEC/Rec2 (VIMSS)||8, 225|
|GSU1823||GSU1823||hypothetical protein (VIMSS)||8, 140|
|GSU1840||GSU1840||PAP2 family protein (VIMSS)||8, 219|
|GSU1998||GSU1998||transporter, putative (VIMSS)||8, 99|
|GSU2099||GSU2099||sensory box protein, putative (VIMSS)||8, 276|
|GSU2239||GSU2239||conserved hypothetical protein TIGR00255 (VIMSS)||47, 164|
|GSU2332||GSU2332||hypothetical protein (VIMSS)||8, 47|
|GSU2337||GSU2337||glycosyl transferase, group 20 family protein (NCBI)||47, 164|
|GSU2414||GSU2414||membrane protein, putative (VIMSS)||164, 183|
|GSU2622||GSU2622||HAMP domain/GAF domain/HD domain protein (NCBI)||8, 269|
|GSU2674||GSU2674||hypothetical protein (VIMSS)||164, 323|
|GSU2683||panE||2-dehydropantoate 2-reductase (VIMSS)||47, 164|
|GSU2736||GSU2736||hypothetical protein (VIMSS)||164, 327|
|GSU2976||GSU2976||DedA family protein (VIMSS)||8, 176|
|GSU3049||GSU3049||hypothetical protein (VIMSS)||160, 164|
|GSU3133||GSU3133||penicillin-binding protein, 1A family (VIMSS)||47, 164|
|GSU3147||mobB||molybdopterin-guanine dinucleotide biosynthesis protein MobB (NCBI)||164, 201|
|GSU3310||GSU3310||hypothetical protein (VIMSS)||8, 47|
|GSU3314||GSU3314||lipoprotein, putative (VIMSS)||164, 183|
|GSU3371||GSU3371||AP endonuclease, family 2 (NCBI)||47, 164|
|GSU3382||GSU3382||hypothetical protein (VIMSS)||8, 176|
|GSU3384||GSU3384||cardiolipin synthetase, putative (VIMSS)||8, 231|
|GSU3411||pcrA||ATP-dependent DNA helicase PcrA, putative (NCBI)||164, 281|
|GSU3421||GSU3421||transcriptional regulator, Crp/Fnr family (VIMSS)||126, 164|
|GSU3463||gidB||glucose-inhibited division protein B (NCBI)||8, 71|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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