Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1084(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1084
|Gene||Common Name||Description||Module membership|
|GSU0026||GSU0026||TonB-dependent receptor, putative (VIMSS)||57, 184|
|GSU0027||GSU0027||TolR protein (VIMSS)||57, 266|
|GSU0029||GSU0029||hydrolase, carbon-nitrogen family (VIMSS)||57, 184|
|GSU0033||dnaK||chaperone protein dnaK (NCBI)||57, 184|
|GSU0034||dnaJ||chaperone protein dnaJ (NCBI)||57, 184|
|GSU0217||noxC||nitroreductase family protein (NCBI)||110, 304|
|GSU0371||GSU0371||carbohydrate phosphorylase family protein (VIMSS)||25, 57|
|GSU0495||GSU0495||hypothetical protein (VIMSS)||57, 303|
|GSU0655||rpoH||RNA polymerase sigma-32 factor (NCBI)||57, 298|
|GSU0863||GSU0863||conserved hypothetical protein (VIMSS)||57, 253|
|GSU0919||GSU0919||hypothetical protein (VIMSS)||16, 110|
|GSU0928||GSU0928||peptidase, M16 family (NCBI)||20, 57|
|GSU1035||GSU1035||methyl-accepting chemotaxis protein (NCBI)||57, 189|
|GSU1072||GSU1072||transcriptional regulator, IclR family (VIMSS)||57, 135|
|GSU1083||GSU1083||conserved hypothetical protein (VIMSS)||57, 110|
|GSU1084||GSU1084||hypothetical protein (VIMSS)||57, 110|
|GSU1085||GSU1085||hypothetical protein (VIMSS)||57, 189|
|GSU1086||GSU1086||hypothetical protein (VIMSS)||110, 146|
|GSU1087||GSU1087||conserved hypothetical protein (VIMSS)||110, 114|
|GSU1088||GSU1088||ubiquinone biosynthesis protein AarF, putative (VIMSS)||84, 110|
|GSU1144||GSU1144||chemotaxis protein CheD, putative (VIMSS)||57, 241|
|GSU1148||GSU1148||sensor histidine kinase (VIMSS)||110, 118|
|GSU1370||GSU1370||oxidoreductase, aldo/keto reductase family (NCBI)||57, 321|
|GSU1394||GSU1394||spore coat protein-related protein (NCBI)||20, 57|
|GSU1395||GSU1395||hypothetical protein (VIMSS)||57, 189|
|GSU1479||GSU1479||conserved hypothetical protein (VIMSS)||57, 292|
|GSU1664||GSU1664||conserved hypothetical protein (VIMSS)||110, 118|
|GSU1677||GSU1677||AMP-binding enzyme/acyltransferase (NCBI)||57, 66|
|GSU1714||GSU1714||BRO family protein, truncation (VIMSS)||110, 224|
|GSU1720||GSU1720||6-pyruvoyl tetrahydrobiopterin synthase family protein (NCBI)||57, 125|
|GSU1947||GSU1947||hypothetical protein (VIMSS)||57, 292|
|GSU2130||GSU2130||hypothetical protein (VIMSS)||110, 268|
|GSU2137||GSU2137||metal ion efflux outer membrane protein family protein, putative (VIMSS)||110, 189|
|GSU2317||GSU2317||trkA domain protein (NCBI)||110, 118|
|GSU2417||GSU2417||hypothetical protein (VIMSS)||57, 135|
|GSU2420||GSU2420||ferredoxin family protein (VIMSS)||57, 293|
|GSU2459||GSU2459||hypothetical protein (VIMSS)||57, 179|
|GSU2525||GSU2525||nitroreductase family protein (VIMSS)||57, 307|
|GSU2526||GSU2526||membrane protein, putative (VIMSS)||57, 125|
|GSU2747||GSU2747||hypothetical protein (VIMSS)||110, 341|
|GSU2750||GSU2750||conserved domain protein (VIMSS)||57, 253|
|GSU2786||b2530||cysteine desulfurase (NCBI)||57, 78|
|GSU2818||GSU2818||membrane protein, putative (VIMSS)||110, 226|
|GSU3026||GSU3026||flagellar protein FlbD, putative (VIMSS)||110, 236|
|GSU3029||GSU3029||acyltransferase family protein (NCBI)||57, 110|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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