Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1395(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1395
|Gene||Common Name||Description||Module membership|
|GSU0026||GSU0026||TonB-dependent receptor, putative (VIMSS)||57, 184|
|GSU0027||GSU0027||TolR protein (VIMSS)||57, 266|
|GSU0029||GSU0029||hydrolase, carbon-nitrogen family (VIMSS)||57, 184|
|GSU0033||dnaK||chaperone protein dnaK (NCBI)||57, 184|
|GSU0034||dnaJ||chaperone protein dnaJ (NCBI)||57, 184|
|GSU0062||GSU0062||TraD protein, putative (VIMSS)||189, 319|
|GSU0150||argB||acetylglutamate kinase (NCBI)||107, 189|
|GSU0206||GSU0206||ZIP zinc transporter family protein (VIMSS)||189, 206|
|GSU0231||GSU0231||hypothetical protein (VIMSS)||189, 224|
|GSU0330||GSU0330||general secretion pathway protein C, putative (NCBI)||173, 189|
|GSU0371||GSU0371||carbohydrate phosphorylase family protein (VIMSS)||25, 57|
|GSU0495||GSU0495||hypothetical protein (VIMSS)||57, 303|
|GSU0655||rpoH||RNA polymerase sigma-32 factor (NCBI)||57, 298|
|GSU0848||GSU0848||ferredoxin family protein, putative (VIMSS)||21, 189|
|GSU0863||GSU0863||conserved hypothetical protein (VIMSS)||57, 253|
|GSU0928||GSU0928||peptidase, M16 family (NCBI)||20, 57|
|GSU1015||GSU1015||hypothetical protein (VIMSS)||21, 189|
|GSU1035||GSU1035||methyl-accepting chemotaxis protein (NCBI)||57, 189|
|GSU1065||GSU1065||hypothetical protein (VIMSS)||173, 189|
|GSU1072||GSU1072||transcriptional regulator, IclR family (VIMSS)||57, 135|
|GSU1083||GSU1083||conserved hypothetical protein (VIMSS)||57, 110|
|GSU1084||GSU1084||hypothetical protein (VIMSS)||57, 110|
|GSU1085||GSU1085||hypothetical protein (VIMSS)||57, 189|
|GSU1142||cheW-3||purine-binding chemotaxis protein CheW (NCBI)||189, 241|
|GSU1144||GSU1144||chemotaxis protein CheD, putative (VIMSS)||57, 241|
|GSU1163||GSU1163||ABC transporter, permease protein (VIMSS)||189, 266|
|GSU1220||GSU1220||response regulator (VIMSS)||189, 336|
|GSU1370||GSU1370||oxidoreductase, aldo/keto reductase family (NCBI)||57, 321|
|GSU1394||GSU1394||spore coat protein-related protein (NCBI)||20, 57|
|GSU1395||GSU1395||hypothetical protein (VIMSS)||57, 189|
|GSU1479||GSU1479||conserved hypothetical protein (VIMSS)||57, 292|
|GSU1577||cobO||cob(I)alamin adenosyltransferase (NCBI)||189, 231|
|GSU1677||GSU1677||AMP-binding enzyme/acyltransferase (NCBI)||57, 66|
|GSU1720||GSU1720||6-pyruvoyl tetrahydrobiopterin synthase family protein (NCBI)||57, 125|
|GSU1942||GSU1942||UDP-glucose/GDP-mannose dehydrogenase family protein (VIMSS)||189, 319|
|GSU1947||GSU1947||hypothetical protein (VIMSS)||57, 292|
|GSU2013||GSU2013||phosphoglucomutase/phosphomannomutase family protein (VIMSS)||55, 189|
|GSU2118||GSU2118||integrative genetic element Gsu21, integrase (VIMSS)||189, 307|
|GSU2137||GSU2137||metal ion efflux outer membrane protein family protein, putative (VIMSS)||110, 189|
|GSU2175||GSU2175||trfA-related protein (VIMSS)||71, 189|
|GSU2302||GSU2302||trehalose-phosphatase, putative (VIMSS)||20, 189|
|GSU2386||GSU2386||methylcobamide:CoM methyltransferase-related protein (NCBI)||189, 266|
|GSU2393||GSU2393||ISGsu5, transposase, truncation (VIMSS)||121, 189|
|GSU2417||GSU2417||hypothetical protein (VIMSS)||57, 135|
|GSU2420||GSU2420||ferredoxin family protein (VIMSS)||57, 293|
|GSU2459||GSU2459||hypothetical protein (VIMSS)||57, 179|
|GSU2525||GSU2525||nitroreductase family protein (VIMSS)||57, 307|
|GSU2526||GSU2526||membrane protein, putative (VIMSS)||57, 125|
|GSU2719||hoxY||NAD-reducing hydrogenase, delta subunit (NCBI)||189, 224|
|GSU2750||GSU2750||conserved domain protein (VIMSS)||57, 253|
|GSU2786||b2530||cysteine desulfurase (NCBI)||57, 78|
|GSU3029||GSU3029||acyltransferase family protein (NCBI)||57, 110|
|GSU3116||GSU3116||1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (NCBI)||81, 189|
|GSU3198||cheY-7||chemotaxis protein CheY (NCBI)||189, 326|
|GSU3202||GSU3202||hypothetical protein (VIMSS)||189, 326|
|GSU3364||GSU3364||hypothetical protein (VIMSS)||81, 189|
|GSU3428||GSU3428||cytochrome c family protein, putative (NCBI)||189, 318|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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