Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1195(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1195
|Gene||Common Name||Description||Module membership|
|GSU0002||recF||recF protein (NCBI)||212, 301|
|GSU0513||GSU0513||dephospho-CoA kinase (VIMSS)||212, 219|
|GSU0520||GSU0520||conserved hypothetical protein (VIMSS)||40, 212|
|GSU0879||cheV||chemotaxis protein CheV (NCBI)||8, 212|
|GSU1111||GSU1111||conserved hypothetical protein TIGR00048 (VIMSS)||139, 212|
|GSU1116||GSU1116||conserved domain protein (VIMSS)||212, 267|
|GSU1129||GSU1129||sigma-54 dependent DNA-binding response regulator (VIMSS)||199, 239|
|GSU1130||GSU1130||chromosome segregation SMC protein, putative (VIMSS)||199, 239|
|GSU1131||GSU1131||conserved hypothetical protein (VIMSS)||199, 239|
|GSU1195||GSU1195||HD domain protein (VIMSS)||199, 212|
|GSU1208||GSU1208||membrane protein, putative (NCBI)||67, 212|
|GSU1273||carA||carbamoyl-phosphate synthase, small subunit (NCBI)||39, 212|
|GSU1301||cheW-5||purine-binding chemotaxis protein CheW (NCBI)||212, 299|
|GSU1358||GSU1358||conserved hypothetical protein (VIMSS)||199, 212|
|GSU1361||GSU1361||Piwi domain protein (NCBI)||212, 299|
|GSU1364||GSU1364||HNH endonuclease family protein (NCBI)||199, 338|
|GSU1421||GSU1421||nuclease SbcCD, D subunit, putative (NCBI)||212, 219|
|GSU1422||GSU1422||nuclease SbcCD, C subunit, putative (NCBI)||212, 219|
|GSU1489||GSU1489||membrane protein, putative (VIMSS)||75, 199|
|GSU1513||GSU1513||conserved domain protein (NCBI)||199, 316|
|GSU1514||GSU1514||heptosyltransferase family protein (VIMSS)||29, 199|
|GSU1859||GSU1859||keto/oxoacid ferredoxin oxidoreductase, gamma subunit (VIMSS)||199, 239|
|GSU1861||GSU1861||keto/oxoacid ferredoxin oxidoreductase, beta subunit (VIMSS)||170, 199|
|GSU1862||GSU1862||keto/oxoacid ferredoxin oxidoreductase subunit (VIMSS)||199, 239|
|GSU1864||ksgA||dimethyladenosine transferase (NCBI)||199, 249|
|GSU1865||gcp||metalloendopeptidase, putative, glycoprotease family (NCBI)||199, 249|
|GSU1869||GSU1869||lipoprotein, putative (VIMSS)||199, 249|
|GSU1871||GSU1871||ribonucleoside-diphosphate reductase, putative (NCBI)||168, 199|
|GSU1872||GSU1872||hypothetical protein (VIMSS)||199, 209|
|GSU1898||GSU1898||membrane protein, putative (VIMSS)||29, 212|
|GSU1901||GSU1901||hypothetical protein (VIMSS)||29, 212|
|GSU1935||birA||birA biofunctional protein, putative (NCBI)||98, 212|
|GSU2106||GSU2106||hypothetical protein (VIMSS)||199, 301|
|GSU2367||GSU2367||organic solvent tolerance protein, putative (NCBI)||98, 212|
|GSU2517||GSU2517||rhodanese-like domain/cysteine-rich domain protein (NCBI)||43, 212|
|GSU2520||GSU2520||(R)-2-hydroxyglutaryl-CoA dehydratase activator (VIMSS)||83, 212|
|GSU3204||GSU3204||conserved hypothetical protein (VIMSS)||212, 299|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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