Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1749(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1749
|Gene||Common Name||Description||Module membership|
|GSU0072||GSU0072||hypothetical protein (VIMSS)||70, 281|
|GSU0301||GSU0301||lytic murein transglycosylase, putative (VIMSS)||11, 197|
|GSU0390||GSU0390||conserved hypothetical protein (VIMSS)||11, 18|
|GSU0570||GSU0570||conserved hypothetical protein (VIMSS)||47, 70|
|GSU0638||GSU0638||conserved hypothetical protein (VIMSS)||70, 158|
|GSU0639||GSU0639||hypothetical protein (NCBI)||70, 158|
|GSU0652||nadE||NAD+ synthetase (NCBI)||11, 197|
|GSU0654||moeB||thiF family protein (NCBI)||11, 315|
|GSU0906||rpsU-1||ribosomal protein S21 (NCBI)||11, 248|
|GSU0992||GSU0992||hypothetical protein (VIMSS)||11, 250|
|GSU1030||GSU1030||methyl-accepting chemotaxis protein (VIMSS)||70, 269|
|GSU1182||malQ||4-alpha-glucanotransferase (NCBI)||70, 269|
|GSU1186||GSU1186||hypothetical protein (VIMSS)||70, 269|
|GSU1227||GSU1227||ABC transporter, ATP-binding protein (VIMSS)||11, 147|
|GSU1228||GSU1228||cytochrome c family protein (VIMSS)||11, 147|
|GSU1233||GSU1233||phosphoesterase, putative (NCBI)||11, 50|
|GSU1377||GSU1377||3-hydroxybutyryl-CoA dehydratase (VIMSS)||11, 126|
|GSU1405||GSU1405||hypothetical protein (VIMSS)||70, 281|
|GSU1523||surE||stationary-phase survival protein SurE (NCBI)||47, 70|
|GSU1574||GSU1574||hypothetical protein (VIMSS)||70, 281|
|GSU1706||panC||pantoate--beta-alanine ligase (NCBI)||11, 125|
|GSU1713||GSU1713||conserved hyothetical protein, truncation (VIMSS)||70, 304|
|GSU1746||ihfB||integration host factor, beta subunit (NCBI)||11, 265|
|GSU1748||GSU1748||RNA methyltransferase, TrmA family (VIMSS)||70, 226|
|GSU1749||GSU1749||hypothetical protein (VIMSS)||11, 70|
|GSU1750||infA||translation initiation factor IF-1 (NCBI)||70, 314|
|GSU2021||pepQ-2||xaa-pro dipeptidase (NCBI)||11, 309|
|GSU2023||GSU2023||conserved hypothetical protein (VIMSS)||11, 262|
|GSU2119||GSU2119||integrative genetic element Gsu56, integrase (VIMSS)||70, 274|
|GSU2120||ihfA-2||integration host factor, alpha subunit (NCBI)||70, 274|
|GSU2151||ssb-1||single-strand binding protein (NCBI)||6, 70|
|GSU2153||GSU2153||hypothetical protein (VIMSS)||70, 337|
|GSU2155||GSU2155||hypothetical protein (VIMSS)||70, 135|
|GSU2156||GSU2156||hypothetical protein (VIMSS)||1, 70|
|GSU2157||nrd||conserved domain protein (NCBI)||70, 153|
|GSU2287||GSU2287||response regulator (VIMSS)||11, 46|
|GSU2313||GSU2313||response regulator (VIMSS)||70, 140|
|GSU2353||GSU2353||conserved hypothetical protein (VIMSS)||32, 70|
|GSU2647||GSU2647||conserved hypothetical protein (VIMSS)||11, 147|
|GSU2727||GSU2727||hypothetical protein (VIMSS)||11, 147|
|GSU2915||GSU2915||sigma-54 dependent DNA-binding response regulator (VIMSS)||11, 116|
|GSU2929||GSU2929||conserved hypothetical protein (NCBI)||47, 70|
|GSU2931||GSU2931||hypothetical protein (VIMSS)||70, 79|
|GSU3167||GSU3167||hypothetical protein (VIMSS)||70, 130|
|GSU3169||GSU3169||conserved domain protein (NCBI)||70, 269|
|GSU3294||GSU3294||rubredoxin-oxygen oxidoreductase, putative (VIMSS)||11, 258|
|GSU3318||GSU3318||conserved hypothetical protein (VIMSS)||11, 50|
|GSU3320||prmA||ribosomal protein L11 methyltransferase, putative (NCBI)||11, 50|
|GSU3321||GSU3321||phosphoglucomutase/phosphomannomutase family protein (VIMSS)||11, 50|
|GSU3322||corA-2||magnesium and cobalt transport protein CorA (NCBI)||11, 50|
|GSU3405||GSU3405||amino acid ABC transporter, permease protein (VIMSS)||11, 18|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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