Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2111(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2111
|Gene||Common Name||Description||Module membership|
|GSU0000.1||dnaA||chromosomal replication initiator protein DnaA (NCBI)||102, 316|
|GSU0001||dnaN||DNA polymerase III, beta subunit (NCBI)||83, 102|
|GSU0009||GSU0009||sensory box histidine kinase (VIMSS)||217, 249|
|GSU0273||GSU0273||radical SAM domain protein (NCBI)||249, 278|
|GSU0310||GSU0310||conserved hypothetical protein (VIMSS)||217, 249|
|GSU0581||GSU0581||cold-shock domain family protein (VIMSS)||102, 248|
|GSU0634||GSU0634||glycosyl transferase, group 1 family protein (VIMSS)||204, 249|
|GSU1113||GSU1113||carbohydrate kinase, PfkB family (VIMSS)||87, 102|
|GSU1136||GSU1136||5-formyltetrahydrofolate cyclo-ligase family protein (VIMSS)||249, 265|
|GSU1138||GSU1138||Ser/Thr protein phosphatase family protein (NCBI)||102, 207|
|GSU1276||carB||carbamoyl-phosphate synthase, large subunit (NCBI)||132, 249|
|GSU1390||GSU1390||DNA-binding protein (NCBI)||88, 249|
|GSU1391||GSU1391||Fic family protein (NCBI)||249, 278|
|GSU1392||GSU1392||CRISPR-associated protein Cas1 (NCBI)||249, 336|
|GSU1393||GSU1393||CRISPR-associated protein, CT1978 family (NCBI)||163, 249|
|GSU1424||GSU1424||hypothetical protein (VIMSS)||31, 102|
|GSU1524||pcm||protein-L-isoaspartate O-methyltransferase (NCBI)||102, 192|
|GSU1679||GSU1679||hypothetical protein (VIMSS)||51, 249|
|GSU1753||GSU1753||lysyl-tRNA synthetase-related protein (NCBI)||163, 249|
|GSU1758||purM||phosphoribosylformylglycinamidine cyclo-ligase (VIMSS)||30, 249|
|GSU1805||glmM||phosphoglucosamine mutase (NCBI)||102, 143|
|GSU1814||GSU1814||septum formation initiator family protein (NCBI)||31, 102|
|GSU1864||ksgA||dimethyladenosine transferase (NCBI)||199, 249|
|GSU1865||gcp||metalloendopeptidase, putative, glycoprotease family (NCBI)||199, 249|
|GSU1866||GSU1866||phoH family protein (VIMSS)||249, 333|
|GSU1868||GSU1868||aminotransferase, class V (VIMSS)||249, 308|
|GSU1869||GSU1869||lipoprotein, putative (VIMSS)||199, 249|
|GSU1907||pssA||CDP-diacylglycerol--serineO-phosphatidyltransferase (NCBI)||102, 248|
|GSU1914||GSU1914||membrane-associated zinc metalloprotease, putative (VIMSS)||67, 102|
|GSU1946||GSU1946||hypothetical protein (VIMSS)||102, 254|
|GSU2093||GSU2093||ABC transporter, ATP-binding protein (VIMSS)||217, 249|
|GSU2109||GSU2109||hypothetical protein (VIMSS)||102, 324|
|GSU2110||GSU2110||hypothetical protein (VIMSS)||102, 249|
|GSU2111||GSU2111||hypothetical protein (VIMSS)||102, 249|
|GSU2235||GSU2235||endoribonuclease L-PSP, putative (VIMSS)||102, 324|
|GSU2236||relA||GTP pyrophosphokinase (NCBI)||102, 306|
|GSU2246||GSU2246||polysaccharide biosynthesis domain protein (VIMSS)||102, 330|
|GSU2248||GSU2248||conserved hypothetical protein (VIMSS)||87, 102|
|GSU2264||lpxA||acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase (NCBI)||249, 277|
|GSU2889||GSU2889||hypothetical protein (VIMSS)||68, 249|
|GSU3064||ftsA||cell division protein FtsA (NCBI)||249, 265|
|GSU3346||GSU3346||potassium uptake protein, Kup system (VIMSS)||249, 295|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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