Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2464(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2464
|Gene||Common Name||Description||Module membership|
|GSU0237||GSU0237||MaoC-like domain protein (NCBI)||156, 333|
|GSU0362||GSU0362||hypothetical protein (VIMSS)||142, 183|
|GSU0365||cyd-2||cytochrome c3 (NCBI)||52, 156|
|GSU0370||GSU0370||hypothetical protein (VIMSS)||144, 156|
|GSU0400||GSU0400||methyl-accepting chemotaxis protein (VIMSS)||82, 156|
|GSU0436||pilT-3||twitching motility protein PilT (NCBI)||78, 183|
|GSU0446||GSU0446||conserved hypothetical protein TIGR00046 (VIMSS)||147, 183|
|GSU0540||GSU0540||hypothetical protein (NCBI)||142, 156|
|GSU0541||polA||DNA polymerase I (NCBI)||164, 183|
|GSU0656||ilvE||branched-chain amino acid aminotransferase (NCBI)||75, 183|
|GSU0671||rluC||ribosomal large subunit pseudouridine synthase C (NCBI)||26, 183|
|GSU0751||GSU0751||conserved hypothetical protein (VIMSS)||147, 183|
|GSU0825||GSU0825||pirin family protein (VIMSS)||126, 183|
|GSU0890||ligA||DNA ligase, NAD-dependent (NCBI)||183, 281|
|GSU0894||ppiB||peptidyl-prolyl cis-trans isomerase, cyclophilin-type (NCBI)||183, 245|
|GSU0952||GSU0952||GGDEF domain protein (NCBI)||26, 183|
|GSU1067||GSU1067||conserved hypothetical protein (VIMSS)||156, 183|
|GSU1298||GSU1298||methyl-accepting chemotaxis protein (VIMSS)||126, 183|
|GSU1443||GSU1443||sensor histidine kinase/response regulator (VIMSS)||183, 191|
|GSU1527||GSU1527||conserved hypothetical protein (VIMSS)||147, 183|
|GSU1704||GSU1704||methyl-accepting chemotaxis protein, putative (VIMSS)||156, 329|
|GSU1772||ctpA-2||carboxy-terminal processing protease (NCBI)||25, 183|
|GSU1809||ftsH-2||cell division protein FtsH (NCBI)||183, 207|
|GSU1870||GSU1870||GGDEF domain protein (VIMSS)||183, 335|
|GSU1997||GSU1997||PDZ domain protein (NCBI)||156, 333|
|GSU2102||GSU2102||pyruvate formate-lyase-activating enzyme, putative (VIMSS)||126, 183|
|GSU2364||rfbA||mannose-6-phosphate isomerase (NCBI)||112, 156|
|GSU2414||GSU2414||membrane protein, putative (VIMSS)||164, 183|
|GSU2464||GSU2464||hypothetical protein (VIMSS)||156, 183|
|GSU2565||GSU2565||sensor histidine kinase (VIMSS)||112, 156|
|GSU2587||GSU2587||transcriptional regulator, MarR family (VIMSS)||140, 183|
|GSU2589||GSU2589||hypothetical protein (VIMSS)||156, 190|
|GSU2651||GSU2651||amino acid ABC transporter, ATP-binding protein (VIMSS)||13, 156|
|GSU2659||GSU2659||hypothetical protein (VIMSS)||183, 287|
|GSU2759||GSU2759||potassium efflux system protein (VIMSS)||183, 287|
|GSU2994||cobM||precorrin-4 C11-methyltransferase (NCBI)||153, 156|
|GSU3000||GSU3000||cbiX protein (NCBI)||183, 265|
|GSU3108||rho||transcription termination factor Rho (NCBI)||183, 335|
|GSU3128||GSU3128||hypothetical protein (VIMSS)||95, 183|
|GSU3160||rluC||RNA pseudouridine synthase family protein (NCBI)||42, 183|
|GSU3203||GSU3203||outer membrane lipoprotein carrier protein LolA, putative (NCBI)||104, 183|
|GSU3314||GSU3314||lipoprotein, putative (VIMSS)||164, 183|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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