Organism : Geobacter sulfurreducens | Module List :
conserved hypothetical protein (VIMSS)
Functional Annotations (1)
|Predicted metal-binding protein||cog/ cog|
Regulation information for GSU0751(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU0751
|Predicted metal-binding protein||cog/ cog|
Module neighborhood information for GSU0751
|Gene||Common Name||Description||Module membership|
|GSU0007||GSU0007||sensory box histidine kinase (VIMSS)||147, 159|
|GSU0107||spo0J||parB-like domain protein (NCBI)||147, 181|
|GSU0362||GSU0362||hypothetical protein (VIMSS)||142, 183|
|GSU0436||pilT-3||twitching motility protein PilT (NCBI)||78, 183|
|GSU0446||GSU0446||conserved hypothetical protein TIGR00046 (VIMSS)||147, 183|
|GSU0541||polA||DNA polymerase I (NCBI)||164, 183|
|GSU0606||alr||alanine racemase (NCBI)||147, 231|
|GSU0607||selD||selenide, water dikinase, selenocysteine-containing (NCBI)||147, 231|
|GSU0656||ilvE||branched-chain amino acid aminotransferase (NCBI)||75, 183|
|GSU0671||rluC||ribosomal large subunit pseudouridine synthase C (NCBI)||26, 183|
|GSU0679||GSU0679||tellurite resistance protein-related protein (VIMSS)||25, 147|
|GSU0689||GSU0689||protein export membrane protein, SecD/SecF family, putative (VIMSS)||147, 309|
|GSU0751||GSU0751||conserved hypothetical protein (VIMSS)||147, 183|
|GSU0825||GSU0825||pirin family protein (VIMSS)||126, 183|
|GSU0890||ligA||DNA ligase, NAD-dependent (NCBI)||183, 281|
|GSU0894||ppiB||peptidyl-prolyl cis-trans isomerase, cyclophilin-type (NCBI)||183, 245|
|GSU0932||uraA||uracil permease (NCBI)||147, 164|
|GSU0952||GSU0952||GGDEF domain protein (NCBI)||26, 183|
|GSU1067||GSU1067||conserved hypothetical protein (VIMSS)||156, 183|
|GSU1227||GSU1227||ABC transporter, ATP-binding protein (VIMSS)||11, 147|
|GSU1228||GSU1228||cytochrome c family protein (VIMSS)||11, 147|
|GSU1291||GSU1291||response regulator (VIMSS)||147, 158|
|GSU1298||GSU1298||methyl-accepting chemotaxis protein (VIMSS)||126, 183|
|GSU1443||GSU1443||sensor histidine kinase/response regulator (VIMSS)||183, 191|
|GSU1527||GSU1527||conserved hypothetical protein (VIMSS)||147, 183|
|GSU1541||GSU1541||conserved hypothetical protein (VIMSS)||13, 147|
|GSU1543||GSU1543||hypothetical protein (VIMSS)||147, 262|
|GSU1772||ctpA-2||carboxy-terminal processing protease (NCBI)||25, 183|
|GSU1809||ftsH-2||cell division protein FtsH (NCBI)||183, 207|
|GSU1838||hrpB||ATP-dependent helicase HrpB (NCBI)||147, 338|
|GSU1870||GSU1870||GGDEF domain protein (VIMSS)||183, 335|
|GSU1917||uppS||undecaprenyl diphosphate synthase (NCBI)||147, 333|
|GSU2078||rodA||rod shape-determining protein RodA (NCBI)||147, 207|
|GSU2102||GSU2102||pyruvate formate-lyase-activating enzyme, putative (VIMSS)||126, 183|
|GSU2334||GSU2334||hypothetical protein (VIMSS)||59, 147|
|GSU2414||GSU2414||membrane protein, putative (VIMSS)||164, 183|
|GSU2464||GSU2464||hypothetical protein (VIMSS)||156, 183|
|GSU2545||maf||maf protein (NCBI)||42, 147|
|GSU2587||GSU2587||transcriptional regulator, MarR family (VIMSS)||140, 183|
|GSU2647||GSU2647||conserved hypothetical protein (VIMSS)||11, 147|
|GSU2659||GSU2659||hypothetical protein (VIMSS)||183, 287|
|GSU2694||GSU2694||hypothetical protein (VIMSS)||17, 147|
|GSU2727||GSU2727||hypothetical protein (VIMSS)||11, 147|
|GSU2756||GSU2756||hypothetical protein (VIMSS)||147, 176|
|GSU2759||GSU2759||potassium efflux system protein (VIMSS)||183, 287|
|GSU2783||GSU2783||HDIG domain protein (VIMSS)||147, 296|
|GSU3000||GSU3000||cbiX protein (NCBI)||183, 265|
|GSU3108||rho||transcription termination factor Rho (NCBI)||183, 335|
|GSU3128||GSU3128||hypothetical protein (VIMSS)||95, 183|
|GSU3160||rluC||RNA pseudouridine synthase family protein (NCBI)||42, 183|
|GSU3203||GSU3203||outer membrane lipoprotein carrier protein LolA, putative (NCBI)||104, 183|
|GSU3205||GSU3205||MiaB-like tRNA modifying enzyme YliG (NCBI)||47, 147|
|GSU3307||hisS||histidyl-tRNA synthetase, putative (NCBI)||147, 245|
|GSU3314||GSU3314||lipoprotein, putative (VIMSS)||164, 183|
|GSU3353||rluD||RNA pseudouridine synthase family protein (NCBI)||147, 289|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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