Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU3183(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU3183
|Gene||Common Name||Description||Module membership|
|GSU0232||GSU0232||hypothetical protein (VIMSS)||191, 254|
|GSU0316||GSU0316||hypothetical protein (VIMSS)||8, 191|
|GSU0568||GSU0568||hypothetical protein (VIMSS)||47, 260|
|GSU0603||GSU0603||hypothetical protein (VIMSS)||191, 254|
|GSU0759||GSU0759||hypothetical protein (VIMSS)||260, 278|
|GSU0933||upp||uracil phosphoribosyltransferase (NCBI)||145, 260|
|GSU0954||GSU0954||conserved hypothetical protein (VIMSS)||260, 338|
|GSU1073||GSU1073||conserved hypothetical protein (VIMSS)||35, 260|
|GSU1074||GSU1074||conserved hypothetical protein TIGR01033 (VIMSS)||31, 260|
|GSU1077||ruvB||Holliday junction DNA helicase RuvB (NCBI)||208, 260|
|GSU1078||GSU1078||chromosomal replication initiator protein DnaA, truncation (NCBI)||226, 260|
|GSU1327||GSU1327||homocysteine S-methyltransferase domain protein (VIMSS)||79, 260|
|GSU1354||GSU1354||plasmid stabilization system family protein (NCBI)||159, 260|
|GSU1437||GSU1437||peptidase, M48 family (NCBI)||260, 301|
|GSU1443||GSU1443||sensor histidine kinase/response regulator (VIMSS)||183, 191|
|GSU1449||GSU1449||hypothetical protein (VIMSS)||87, 260|
|GSU1453||GSU1453||hypothetical protein (VIMSS)||191, 330|
|GSU1454||GSU1454||glycosyl transferase, group 2 family protein (VIMSS)||191, 330|
|GSU1456||GSU1456||conserved hypothetical protein (NCBI)||191, 330|
|GSU1457||GSU1457||polysaccharide deacetylase domain protein (NCBI)||191, 330|
|GSU1529||GSU1529||sensory box histidine kinase/response regulator (VIMSS)||42, 191|
|GSU1674||GSU1674||hypothetical protein (VIMSS)||260, 338|
|GSU1802||GSU1802||YjeF family protein (VIMSS)||260, 306|
|GSU1807||GSU1807||conserved hypothetical protein TIGR00159 (VIMSS)||131, 260|
|GSU1845||GSU1845||hypothetical protein (VIMSS)||191, 319|
|GSU1873||pepF||oligoendopeptidase F (NCBI)||103, 191|
|GSU1960||GSU1960||hexapeptide transferase family protein (VIMSS)||191, 327|
|GSU1961||GSU1961||glycosyl transferase, group 2 family protein (VIMSS)||191, 254|
|GSU1962||GSU1962||glycosyl transferase, group 2 family protein (VIMSS)||88, 191|
|GSU1963||GSU1963||polysaccharide biosynthesis domain protein (VIMSS)||191, 327|
|GSU2000||miaA||tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI)||34, 260|
|GSU2016||GSU2016||sensory box/GGDEF family protein (VIMSS)||191, 221|
|GSU2172||GSU2172||OmpA domain protein, putative (VIMSS)||105, 191|
|GSU2225||b2511||GTP-binding protein Era, putative (NCBI)||198, 260|
|GSU2298||GSU2298||hypothetical protein (VIMSS)||131, 260|
|GSU2611||GSU2611||hypothetical protein (VIMSS)||158, 191|
|GSU2891||GSU2891||hypothetical protein (VIMSS)||108, 191|
|GSU3148||GSU3148||sensor histidine kinase (VIMSS)||84, 260|
|GSU3182||GSU3182||conserved domain protein (VIMSS)||191, 330|
|GSU3183||GSU3183||hypothetical protein (VIMSS)||191, 260|
|GSU3282||GSU3282||siroheme synthase, N-terminal domain protein (NCBI)||260, 335|
|GSU3323||ppk||polyphosphate kinase (NCBI)||131, 260|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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