Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2611(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2611
|Gene||Common Name||Description||Module membership|
|GSU0232||GSU0232||hypothetical protein (VIMSS)||191, 254|
|GSU0307||hypC||hydrogenase assembly chaperone hypC/hupF (NCBI)||42, 158|
|GSU0316||GSU0316||hypothetical protein (VIMSS)||8, 191|
|GSU0603||GSU0603||hypothetical protein (VIMSS)||191, 254|
|GSU0638||GSU0638||conserved hypothetical protein (VIMSS)||70, 158|
|GSU0639||GSU0639||hypothetical protein (NCBI)||70, 158|
|GSU0640||GSU0640||conserved hypothetical protein (VIMSS)||95, 158|
|GSU0743||GSU0743||NAD-dependent dehydrogenase subunit (VIMSS)||158, 265|
|GSU0816||GSU0816||ABC transporter, ATP-binding protein (VIMSS)||88, 158|
|GSU1192||GSU1192||conserved hypothetical protein (VIMSS)||98, 158|
|GSU1231||GSU1231||response regulator (VIMSS)||87, 158|
|GSU1291||GSU1291||response regulator (VIMSS)||147, 158|
|GSU1443||GSU1443||sensor histidine kinase/response regulator (VIMSS)||183, 191|
|GSU1453||GSU1453||hypothetical protein (VIMSS)||191, 330|
|GSU1454||GSU1454||glycosyl transferase, group 2 family protein (VIMSS)||191, 330|
|GSU1456||GSU1456||conserved hypothetical protein (NCBI)||191, 330|
|GSU1457||GSU1457||polysaccharide deacetylase domain protein (NCBI)||191, 330|
|GSU1507||GSU1507||heptosyltransferase family protein, putative (VIMSS)||105, 158|
|GSU1529||GSU1529||sensory box histidine kinase/response regulator (VIMSS)||42, 191|
|GSU1595||dut||deoxyuridine 5'-triphosphate nucleotidohydrolase (NCBI)||124, 158|
|GSU1655||GSU1655||sensory box histidine kinase/response regulator (VIMSS)||17, 158|
|GSU1658||GSU1658||response regulator/GGDEF domain protein (NCBI)||158, 218|
|GSU1783||GSU1783||type IV pilus biogenesis protein PilB, putative (VIMSS)||17, 158|
|GSU1785||GSU1785||cytochrome c family protein, putative (NCBI)||158, 179|
|GSU1794||GSU1794||HAM1 protein (NCBI)||158, 248|
|GSU1795||rph||ribonuclease PH (NCBI)||35, 158|
|GSU1845||GSU1845||hypothetical protein (VIMSS)||191, 319|
|GSU1873||pepF||oligoendopeptidase F (NCBI)||103, 191|
|GSU1940||GSU1940||sigma-54 dependent DNA-binding response regulator (VIMSS)||158, 335|
|GSU1953||asnB||asparagine synthase, glutamine-hydrolyzing (NCBI)||158, 333|
|GSU1960||GSU1960||hexapeptide transferase family protein (VIMSS)||191, 327|
|GSU1961||GSU1961||glycosyl transferase, group 2 family protein (VIMSS)||191, 254|
|GSU1962||GSU1962||glycosyl transferase, group 2 family protein (VIMSS)||88, 191|
|GSU1963||GSU1963||polysaccharide biosynthesis domain protein (VIMSS)||191, 327|
|GSU2016||GSU2016||sensory box/GGDEF family protein (VIMSS)||191, 221|
|GSU2172||GSU2172||OmpA domain protein, putative (VIMSS)||105, 191|
|GSU2377||GSU2377||hypothetical protein (VIMSS)||51, 158|
|GSU2611||GSU2611||hypothetical protein (VIMSS)||158, 191|
|GSU2620||queA||S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI)||76, 158|
|GSU2891||GSU2891||hypothetical protein (VIMSS)||108, 191|
|GSU3182||GSU3182||conserved domain protein (VIMSS)||191, 330|
|GSU3183||GSU3183||hypothetical protein (VIMSS)||191, 260|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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