Organism : Halobacterium salinarum NRC-1 | Module List :
Regulation information for VNG0811H(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 8 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for VNG0811H
|Gene||Common Name||Description||Module membership|
|VNG0020H||hypothetical protein VNG0020H||30, 108, 247|
|VNG0022H||hypothetical protein VNG0022H||30, 254|
|VNG0023H||hypothetical protein VNG0023H||30, 254, 290|
|VNG0054H||hypothetical protein VNG0054H||70, 111, 138, 147|
|VNG0139H||hypothetical protein VNG0139H||17, 18, 30, 196|
|VNG0140H||hypothetical protein VNG0140H||18, 26, 30, 239|
|VNG0196H||hypothetical protein VNG0196H||30, 267, 281|
|VNG0469H||hypothetical protein VNG0469H||30, 91|
|VNG0470G||trp3||daunorubicin resistance ABC transporter ATP-binding protein||30, 91|
|VNG0532H||hypothetical protein VNG0532H||30, 70, 108|
|VNG0811H||hypothetical protein VNG0811H||30, 87, 138, 147|
|VNG0813G||potD||spermidine/putrescine-binding protein||87, 138, 147|
|VNG0926H||hypothetical protein VNG0926H||30, 108|
|VNG1059C||hypothetical protein VNG1059C||87, 213|
|VNG1060H||hypothetical protein VNG1060H||87, 213|
|VNG1270H||hypothetical protein VNG1270H||18, 30, 37, 42|
|VNG1271H||hypothetical protein VNG1271H||18, 30, 37|
|VNG1646G||trpG1||anthranilate synthase subunit beta||30, 48, 64, 87|
|VNG1648G||trpF||hypothetical protein VNG1648G||4, 5, 28, 30, 48, 64, 87|
|VNG1649G||trpD||anthranilate phosphoribosyltransferase||28, 30, 48, 64, 87, 92|
|VNG1650H||hypothetical protein VNG1650H||4, 5, 30, 34, 35, 245, 295|
|VNG1681C||hypothetical protein VNG1681C||20, 26, 28, 31, 147, 232|
|VNG1952H||hypothetical protein VNG1952H||18, 28, 30, 42, 68, 80, 91, 108, 121, 135|
|VNG1953C||hypothetical protein VNG1953C||13, 18, 30, 34, 42, 80, 91, 108, 115, 121|
|VNG1956H||hypothetical protein VNG1956H||18, 30, 34, 42, 80, 91, 108, 115, 121|
|VNG1986C||hypothetical protein VNG1986C||17, 26, 30, 31, 108|
|VNG6191H||hypothetical protein VNG6191H||17, 30, 34, 38, 41, 44, 80, 91|
|VNG6196G||phoT2||sodium-dependent phosphate transporter||30, 36, 41, 80, 87, 89|
|VNG6258C||hypothetical protein VNG6258C||18, 30, 108|
|VNG6292C||hypothetical protein VNG6292C||17, 18, 30, 89|
|VNG6390H||hypothetical protein VNG6390H||4, 26, 30, 34, 35, 245, 295|
|VNG6400H||hypothetical protein VNG6400H||18, 30, 80, 133, 245, 290|
|VNG6427H||hypothetical protein VNG6427H||17, 18, 30, 62, 74, 89, 107|
|VNG6431H||hypothetical protein VNG6431H||17, 26, 30, 38, 178|
|VNG7011||repH||plasmid replication protein RepH||17, 18, 30, 107, 122, 224, 287|
|VNG7075||hypothetical protein VNG7075||87, 250, 279, 292|
|VNG7077||hypothetical protein VNG7077||87, 250, 276, 279|
|VNG7107||putative ISH4 transposase||37, 147|
|VNG7108||hypothetical protein VNG7108||117, 147|
|VNG7110||hypothetical protein VNG7110||18, 38, 91, 147|
|VNG7136||hypothetical protein VNG7136||70, 138|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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