Organism : Halobacterium salinarum NRC-1 | Module List :
Regulation information for VNG0892H(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for VNG0892H
|Gene||Common Name||Description||Module membership|
|VNG0094C||hypothetical protein VNG0094C||283|
|VNG0153C||hypothetical protein VNG0153C||195|
|VNG0233H||hypothetical protein VNG0233H||191, 283|
|VNG0285C||hypothetical protein VNG0285C||195|
|VNG0286C||hypothetical protein VNG0286C||195|
|VNG0311H||hypothetical protein VNG0311H||195|
|VNG0320H||hypothetical protein VNG0320H||170, 283|
|VNG0373H||hypothetical protein VNG0373H||195|
|VNG0375G||secE||preprotein translocase subunit SecE||195|
|VNG0394C||hypothetical protein VNG0394C||191, 283|
|VNG0401G||epf2||mRNA 3'-end processing factor-like protein||195|
|VNG0571C||putative monovalent cation/H+ antiporter subunit E||195|
|VNG0582C||hypothetical protein VNG0582C||16, 283|
|VNG0583G||cyb||cytochrome b6||119, 283|
|VNG0665G||coxB1||cytochrome c oxidase subunit II||40, 283|
|VNG0741H||hypothetical protein VNG0741H||195|
|VNG0767H||hypothetical protein VNG0767H||195|
|VNG0768H||hypothetical protein VNG0768H||71, 283|
|VNG0787G||rps3e||30S ribosomal protein S3Ae||195|
|VNG0788H||hypothetical protein VNG0788H||195|
|VNG0804C||hypothetical protein VNG0804C||261, 283|
|VNG0849C||hypothetical protein VNG0849C||100, 283|
|VNG0863H||hypothetical protein VNG0863H||195|
|VNG0892H||hypothetical protein VNG0892H||195, 283|
|VNG0903C||hypothetical protein VNG0903C||184, 195|
|VNG0931G||acaB2||3-ketoacyl-CoA thiolase||50, 283|
|VNG0941C||hypothetical protein VNG0941C||262, 283|
|VNG0942G||cheW2||hypothetical protein VNG0942G||191, 283|
|VNG0954C||hypothetical protein VNG0954C||7, 278, 283|
|VNG0978H||hypothetical protein VNG0978H||261, 283|
|VNG0992H||hypothetical protein VNG0992H||229, 283|
|VNG0995H||hypothetical protein VNG0995H||35, 283|
|VNG1029C||hypothetical protein VNG1029C||59, 283|
|VNG1085H||hypothetical protein VNG1085H||229, 283|
|VNG1086C||hypothetical protein VNG1086C||191, 283|
|VNG1087C||hypothetical protein VNG1087C||120, 283|
|VNG1088C||hypothetical protein VNG1088C||199, 283|
|VNG1157G||rpl7ae||50S ribosomal protein L7Ae||191, 283|
|VNG1158G||rps28e||30S ribosomal protein S28e||23, 283|
|VNG1160G||ndk||nucleoside diphosphate kinase||23, 283|
|VNG1190G||sod1||superoxide dismutase||78, 283|
|VNG1213C||hypothetical protein VNG1213C||84, 283|
|VNG1257H||hypothetical protein VNG1257H||195|
|VNG1263C||hypothetical protein VNG1263C||195|
|VNG1538H||hypothetical protein VNG1538H||195|
|VNG1770C||hypothetical protein VNG1770C||195|
|VNG2076G||rpl40e||50S ribosomal protein L40e||195|
|VNG2306H||hypothetical protein VNG2306H||195|
|VNG2509H||hypothetical protein VNG2509H||195|
|VNG2600G||trxA2||hypothetical protein VNG2600G||195|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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