Organism : Halobacterium salinarum NRC-1 | Module List :
Regulation information for VNG1064H(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 8 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for VNG1064H
|Gene||Common Name||Description||Module membership|
|VNG0020H||hypothetical protein VNG0020H||30, 108, 247|
|VNG0055H||hypothetical protein VNG0055H||37, 41, 183, 185|
|VNG0139H||hypothetical protein VNG0139H||17, 18, 30, 196|
|VNG0199H||hypothetical protein VNG0199H||108, 265|
|VNG0532H||hypothetical protein VNG0532H||30, 70, 108|
|VNG0926H||hypothetical protein VNG0926H||30, 108|
|VNG0993H||hypothetical protein VNG0993H||37, 188|
|VNG1064H||hypothetical protein VNG1064H||17, 37, 96, 108|
|VNG1065C||hypothetical protein VNG1065C||96, 102, 108, 111|
|VNG1066C||hypothetical protein VNG1066C||13, 96, 102, 108|
|VNG1219G||urk||uridine kinase||108, 285|
|VNG1270H||hypothetical protein VNG1270H||18, 30, 37, 42|
|VNG1271H||hypothetical protein VNG1271H||18, 30, 37|
|VNG1283H||hypothetical protein VNG1283H||108, 115|
|VNG1284G||trkH1||TRK potassium uptake system protein||108, 115|
|VNG1537C||hypothetical protein VNG1537C||108, 300|
|VNG1577C||hypothetical protein VNG1577C||20, 53, 96, 140, 173|
|VNG1582G||hisC2||hypothetical protein VNG1582G||20, 53, 96, 140, 173|
|VNG1952H||hypothetical protein VNG1952H||18, 28, 30, 42, 68, 80, 91, 108, 121, 135|
|VNG1953C||hypothetical protein VNG1953C||13, 18, 30, 34, 42, 80, 91, 108, 115, 121|
|VNG1956H||hypothetical protein VNG1956H||18, 30, 34, 42, 80, 91, 108, 115, 121|
|VNG1986C||hypothetical protein VNG1986C||17, 26, 30, 31, 108|
|VNG2444C||hypothetical protein VNG2444C||17, 28, 31, 38, 173|
|VNG5120H||None||18, 37, 198|
|VNG6005H||hypothetical protein VNG6005H||37, 198|
|VNG6152H||hypothetical protein VNG6152H||4, 13, 15, 26, 31, 37, 142, 189, 272, 281, 297|
|VNG6180H||hypothetical protein VNG6180H||37|
|VNG6191H||hypothetical protein VNG6191H||17, 30, 34, 38, 41, 44, 80, 91|
|VNG6193H||hypothetical protein VNG6193H||17, 32, 34, 38, 41, 42, 44, 80|
|VNG6197H||hypothetical protein VNG6197H||38, 108|
|VNG6258C||hypothetical protein VNG6258C||18, 30, 108|
|VNG6292C||hypothetical protein VNG6292C||17, 18, 30, 89|
|VNG6293C||hypothetical protein VNG6293C||17|
|VNG6322H||hypothetical protein VNG6322H||17, 168, 178|
|VNG6340H||hypothetical protein VNG6340H||62, 92, 93, 94, 96, 102, 103, 104|
|VNG6344H||hypothetical protein VNG6344H||17, 41|
|VNG6349C||hypothetical protein VNG6349C||17|
|VNG6359H||hypothetical protein VNG6359H||17, 157, 271|
|VNG6427H||hypothetical protein VNG6427H||17, 18, 30, 62, 74, 89, 107|
|VNG6431H||hypothetical protein VNG6431H||17, 26, 30, 38, 178|
|VNG6432H||hypothetical protein VNG6432H||17, 26, 31, 38, 106, 243|
|VNG7011||repH||plasmid replication protein RepH||17, 18, 30, 107, 122, 224, 287|
|VNG7107||putative ISH4 transposase||37, 147|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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