PITA_1 megaCluster: 4 Residual: 0.26

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_1 4 0.26 15 0 0.871168 0

Members

Displaying 1 - 56 of 56
100038548 predicted gene 10521

Details for - - predicted gene 10521

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100038548

Tuberculist Genomic Region

100041482 cadherin 11 pseudogene

Details for - - cadherin 11 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100041482

Tuberculist Genomic Region

100503460 predicted gene, 19705

Details for - - predicted gene, 19705

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503460

Tuberculist Genomic Region

100503890 PET100 homolog (S. cerevisiae)

Details for - - PET100 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503890

Tuberculist Genomic Region

11432 acid phosphatase 2, lysosomal

Details for RP23-20F9.7 - acid phosphatase 2, lysosomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11432

Tuberculist Genomic Region

11977 ATPase, Cu++ transporting, alpha polypeptide

Details for RP23-186F4.3 - ATPase, Cu++ transporting, alpha polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11977

Tuberculist Genomic Region

13544 dishevelled 3, dsh homolog (Drosophila)

Details for - - dishevelled 3, dsh homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13544

Tuberculist Genomic Region

14990 histocompatibility 2, M region locus 2

Details for - - histocompatibility 2, M region locus 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14990

Tuberculist Genomic Region

15902 inhibitor of DNA binding 2

Details for - - inhibitor of DNA binding 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15902

Tuberculist Genomic Region

16068 interleukin 18 binding protein

Details for - - interleukin 18 binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16068

Tuberculist Genomic Region

17281 FYVE and coiled-coil domain containing 1

Details for - - FYVE and coiled-coil domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17281

Tuberculist Genomic Region

19204 platelet-activating factor receptor

Details for RP23-470B20.1 - platelet-activating factor receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19204

Tuberculist Genomic Region

20555 schlafen 1

Details for RP23-308N3.1 - schlafen 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20555

Tuberculist Genomic Region

233575 post-GPI attachment to proteins 2

Details for - - post-GPI attachment to proteins 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233575

Tuberculist Genomic Region

233781 xylosyltransferase 1

Details for - - xylosyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233781

Tuberculist Genomic Region

257919 olfactory receptor 467

Details for - - olfactory receptor 467

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 257919

Tuberculist Genomic Region

277146 T cell receptor alpha variable 6D-4

Details for - - T cell receptor alpha variable 6D-4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 277146

Tuberculist Genomic Region

320534 transmembrane protein 104

Details for RP23-117K15.1 - transmembrane protein 104

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320534

Tuberculist Genomic Region

330256 predicted gene, 20559

Details for - - predicted gene, 20559

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 330256

Tuberculist Genomic Region

434223 predicted gene 1966

Details for - - predicted gene 1966

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434223

Tuberculist Genomic Region

434325 transmembrane protein 221

Details for - - transmembrane protein 221

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434325

Tuberculist Genomic Region

641340 nuclear receptor binding factor 2

Details for - - nuclear receptor binding factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 641340

Tuberculist Genomic Region

665317 component of Sp100-rs pseudogene

Details for - - component of Sp100-rs pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 665317

Tuberculist Genomic Region

667754 carboxylesterase 2D, pseudogene

Details for - - carboxylesterase 2D, pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 667754

Tuberculist Genomic Region

69774 membrane-spanning 4-domains, subfamily A, member 6B

Details for - - membrane-spanning 4-domains, subfamily A, member 6B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69774

Tuberculist Genomic Region

71623 keratin associated protein 5-2

Details for - - keratin associated protein 5-2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71623

Tuberculist Genomic Region

71733 sushi domain containing 2

Details for - - sushi domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71733

Tuberculist Genomic Region

75731 idnK gluconokinase homolog (E. coli)

Details for - - idnK gluconokinase homolog (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75731

Tuberculist Genomic Region

791288 predicted gene 9881

Details for - - predicted gene 9881

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 791288

Tuberculist Genomic Region

83490 phosphoinositide-3-kinase adaptor protein 1

Details for - - phosphoinositide-3-kinase adaptor protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83490

Tuberculist Genomic Region

114644 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3

Details for RP23-395E18.3 - solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114644

Tuberculist Genomic Region

14962 complement factor B

Details for RP24-317H19.4 - complement factor B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14962

Tuberculist Genomic Region

15959 interferon-induced protein with tetratricopeptide repeats 3

Details for - - interferon-induced protein with tetratricopeptide repeats 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15959

Tuberculist Genomic Region

16365 immunoresponsive gene 1

Details for - - immunoresponsive gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16365

Tuberculist Genomic Region

16408 integrin alpha L

Details for - - integrin alpha L

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16408

Tuberculist Genomic Region

170625 sorting nexin 18

Details for - - sorting nexin 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170625

Tuberculist Genomic Region

17254 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2

Details for - - solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17254

Tuberculist Genomic Region

20482 SKI-like

Details for - - SKI-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20482

Tuberculist Genomic Region

20773 serine palmitoyltransferase, long chain base subunit 2

Details for - - serine palmitoyltransferase, long chain base subunit 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20773

Tuberculist Genomic Region

212167 gamma-secretase activating protein

Details for - - gamma-secretase activating protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212167

Tuberculist Genomic Region

216991 ArfGAP with dual PH domains 2

Details for RP23-7J19.2 - ArfGAP with dual PH domains 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216991

Tuberculist Genomic Region

22259 nuclear receptor subfamily 1, group H, member 3

Details for RP23-20F9.5 - nuclear receptor subfamily 1, group H, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22259

Tuberculist Genomic Region

225028 mitogen-activated protein kinase kinase kinase kinase 3

Details for - - mitogen-activated protein kinase kinase kinase kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225028

Tuberculist Genomic Region

226442 zinc finger protein 281

Details for - - zinc finger protein 281

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226442

Tuberculist Genomic Region

226695 interferon activated gene 205

Details for - - interferon activated gene 205

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226695

Tuberculist Genomic Region

230073 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

Details for RP23-9F23.2 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230073

Tuberculist Genomic Region

240921 predicted gene 4955

Details for - - predicted gene 4955

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240921

Tuberculist Genomic Region

246727 2'-5' oligoadenylate synthetase 3

Details for - - 2'-5' oligoadenylate synthetase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 246727

Tuberculist Genomic Region

50721 sirtuin 6

Details for - - sirtuin 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50721

Tuberculist Genomic Region

623121 pyrin domain containing 4

Details for - - pyrin domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 623121

Tuberculist Genomic Region

64380 membrane-spanning 4-domains, subfamily A, member 4C

Details for - - membrane-spanning 4-domains, subfamily A, member 4C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64380

Tuberculist Genomic Region

66102 chemokine (C-X-C motif) ligand 16

Details for DN-491F10.6 - chemokine (C-X-C motif) ligand 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66102

Tuberculist Genomic Region

68427 solute carrier family 39 (metal ion transporter), member 13

Details for RP23-263H8.2 - solute carrier family 39 (metal ion transporter), member 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68427

Tuberculist Genomic Region

68836 mitochondrial ribosomal protein L52

Details for - - mitochondrial ribosomal protein L52

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68836

Tuberculist Genomic Region

74919 solute carrier family 35, member F6

Details for - - solute carrier family 35, member F6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74919

Tuberculist Genomic Region

98999 zinc finger, NFX1-type containing 1

Details for RP23-19L12.5 - zinc finger, NFX1-type containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98999

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRF1_MA0050.1 0.333333 0.000000448

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0017 TTKNWTTTTGWT NA 420 AGAAAGGNAAA IRF1_MA0050.1, STAT1_MA0137.1, IRF2_MA0051.1, V$IRF2_Q6_M01882, V$BLIMP1_Q6_M01066, V$IRF_Q6_01_M00972, V$IRF1_Q6_01_M01881

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.76 TTCCGC Spic.1, Sfpi1.3, Elf5.1, Ehf.2, Elf3.3, SPIB_ETS_DBD_monomeric_14_1, SPI1_ETS_full_monomeric_14_1 0.87 CGACGTCG

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.41 ACGCGC NA NA 0.57 CCNGCTCN NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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