PITA_232 megaCluster: 7 Residual: 0.14 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_232	7	0.14	15	0	0.966075	0

Members

Displaying 1 - 25 of 25

106633 intraflagellar transport 140 Details for - - intraflagellar transport 140 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 106633 Tuberculist Genomic Region	12892 coproporphyrinogen oxidase Details for - - coproporphyrinogen oxidase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12892 Tuberculist Genomic Region
19718 replication factor C (activator 1) 2 Details for - - replication factor C (activator 1) 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19718 Tuberculist Genomic Region	216445 Rho GTPase activating protein 9 Details for - - Rho GTPase activating protein 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216445 Tuberculist Genomic Region
216805 folliculin Details for RP23-180B18.1 - folliculin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216805 Tuberculist Genomic Region	226151 family with sequence similarity 178, member A Details for - - family with sequence similarity 178, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226151 Tuberculist Genomic Region
227099 postmeiotic segregation increased 1 (S. cerevisiae) Details for - - postmeiotic segregation increased 1 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227099 Tuberculist Genomic Region	230661 testis-specific kinase 2 Details for RP23-109A3.2 - testis-specific kinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230661 Tuberculist Genomic Region
235339 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) Details for - - dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 235339 Tuberculist Genomic Region	239839 coiled-coil domain containing 14 Details for - - coiled-coil domain containing 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 239839 Tuberculist Genomic Region
26889 ceroid-lipofuscinosis, neuronal 8 Details for - - ceroid-lipofuscinosis, neuronal 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26889 Tuberculist Genomic Region	327762 DNA replication helicase 2 homolog (yeast) Details for - - DNA replication helicase 2 homolog (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 327762 Tuberculist Genomic Region
328580 tubulin, gamma complex associated protein 6 Details for - - tubulin, gamma complex associated protein 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 328580 Tuberculist Genomic Region	381280 Holliday junction recognition protein Details for - - Holliday junction recognition protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 381280 Tuberculist Genomic Region
56357 isovaleryl coenzyme A dehydrogenase Details for RP23-172B16.1 - isovaleryl coenzyme A dehydrogenase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56357 Tuberculist Genomic Region	67015 coiled-coil domain containing 91 Details for RP23-298K1.1 - coiled-coil domain containing 91 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67015 Tuberculist Genomic Region
68877 MAF1 homolog (S. cerevisiae) Details for - - MAF1 homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68877 Tuberculist Genomic Region	69596 adaptor-related protein 5 complex, sigma 1 subunit Details for RP23-387C21.2 - adaptor-related protein 5 complex, sigma 1 subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69596 Tuberculist Genomic Region
71735 leucine-rich repeats and WD repeat domain containing 1 Details for - - leucine-rich repeats and WD repeat domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71735 Tuberculist Genomic Region	72144 solute carrier family 37 (glycerol-3-phosphate transporter), member 3 Details for - - solute carrier family 37 (glycerol-3-phosphate transporter), member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72144 Tuberculist Genomic Region
80743 vacuolar protein sorting 16 (yeast) Details for RP23-29K12.8 - vacuolar protein sorting 16 (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80743 Tuberculist Genomic Region	98193 DDB1 and CUL4 associated factor 8 Details for - - DDB1 and CUL4 associated factor 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 98193 Tuberculist Genomic Region
234865 nucleoporin 133 Details for - - nucleoporin 133 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 234865 Tuberculist Genomic Region	26385 G protein-coupled receptor kinase 6 Details for - - G protein-coupled receptor kinase 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26385 Tuberculist Genomic Region
105513 charged multivesicular body protein 7 Details for - - charged multivesicular body protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105513 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_SP1_Q6_M00196, V_SP4_Q5_M01273, V_SP1_Q4_01_M00932	1, 1, 1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
12	TKTTTTTWAAA	NA	5400	ARAAACCNTATT	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.47	TCGGCG	NA	1.78	TCTCGGCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.69	GNGGTT	NA	NA	0.87	CTGTGNNA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
mmu-miR-152, mmu-miR-148b, mmu-miR-148a	0.761905	0.0000627

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

Add comment

Log in or register to post comments