Organism : Pseudomonas aeruginosa | Module List :
Regulation information for PA1168(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for PA1168
|Gene||Common Name||Description||Module membership|
|PA0101||PA0101||hypothetical protein (NCBI)||11, 34|
|PA0221||PA0221||probable aminotransferase (NCBI)||425, 473|
|PA0275||PA0275||probable transcriptional regulator (NCBI)||34, 70|
|PA0276||PA0276||hypothetical protein (NCBI)||30, 34|
|PA0338||PA0338||hypothetical protein (NCBI)||34, 39|
|PA0529||PA0529||hypothetical protein (NCBI)||34, 536|
|PA0739||PA0739||probable transcriptional regulator (NCBI)||34, 61|
|PA0861||PA0861||hypothetical protein (NCBI)||34, 87|
|PA0908||PA0908||hypothetical protein (NCBI)||11, 34|
|PA0909||PA0909||hypothetical protein (NCBI)||11, 34|
|PA1036||PA1036||hypothetical protein (NCBI)||34, 457|
|PA1168||PA1168||hypothetical protein (NCBI)||34, 473|
|PA1169||PA1169||probable lipoxygenase (NCBI)||104, 473|
|PA1209||PA1209||hypothetical protein (NCBI)||34, 70|
|PA1604||PA1604||hypothetical protein (NCBI)||34, 432|
|PA1892||PA1892||hypothetical protein (NCBI)||197, 473|
|PA1893||PA1893||hypothetical protein (NCBI)||197, 473|
|PA1894||PA1894||hypothetical protein (NCBI)||411, 473|
|PA1895||PA1895||hypothetical protein (NCBI)||411, 473|
|PA1896||PA1896||hypothetical protein (NCBI)||411, 473|
|PA1897||PA1897||hypothetical protein (NCBI)||411, 473|
|PA2229||PA2229||hypothetical protein (NCBI)||34, 189|
|PA2301||PA2301||hypothetical protein (NCBI)||34, 257|
|PA2326||PA2326||hypothetical protein (NCBI)||34, 290|
|PA2337||mtlR||transcriptional regulator MtlR (NCBI)||34, 494|
|PA2422||PA2422||hypothetical protein (NCBI)||34, 289|
|PA2427||PA2427||hypothetical protein (NCBI)||34, 414|
|PA2434||PA2434||hypothetical protein (NCBI)||34, 334|
|PA2436||PA2436||hypothetical protein (NCBI)||34, 257|
|PA2440||PA2440||hypothetical protein (NCBI)||33, 34|
|PA2447||PA2447||probable transcriptional regulator (NCBI)||34, 196|
|PA2456||PA2456||hypothetical protein (NCBI)||34, 476|
|PA2680||PA2680||probable quinone oxidoreductase (NCBI)||190, 473|
|PA3039||PA3039||probable transporter (NCBI)||473, 475|
|PA3056||PA3056||hypothetical protein (NCBI)||34, 361|
|PA3057||PA3057||hypothetical protein (NCBI)||34, 361|
|PA3362||PA3362||hypothetical protein (NCBI)||30, 34|
|PA3363||amiR||aliphatic amidase regulator (NCBI)||34, 294|
|PA3364||amiC||aliphatic amidase expression-regulating protein (NCBI)||34, 294|
|PA3365||PA3365||probable chaperone (NCBI)||34, 171|
|PA3366||amiE||aliphatic amidase (NCBI)||34, 294|
|PA3488||PA3488||hypothetical protein (NCBI)||293, 473|
|PA3515||PA3515||hypothetical protein (NCBI)||407, 473|
|PA3519||PA3519||hypothetical protein (NCBI)||407, 473|
|PA4142||PA4142||probable secretion protein (NCBI)||112, 473|
|PA4143||PA4143||probable toxin transporter (NCBI)||112, 473|
|PA4144||PA4144||probable outer membrane protein precursor (NCBI)||112, 473|
|PA4327||PA4327||hypothetical protein (NCBI)||34, 87|
|PA4507||PA4507||hypothetical protein (NCBI)||34, 44|
|PA4513||PA4513||probable oxidoreductase (NCBI)||173, 473|
|PA4514||PA4514||probable outer membrane receptor for iron transport (NCBI)||98, 473|
|PA4515||PA4515||putative hydroxylase (NCBI)||98, 473|
|PA4516||PA4516||hypothetical protein (NCBI)||98, 473|
|PA4630||PA4630||hypothetical protein (NCBI)||34, 70|
|PA4650||PA4650||hypothetical protein (NCBI)||392, 473|
|PA4652||PA4652||hypothetical protein (NCBI)||401, 473|
|PA4869||PA4869||hypothetical protein (NCBI)||26, 473|
|PA5087||PA5087||hypothetical protein (NCBI)||231, 473|
|PA5089||PA5089||hypothetical protein (NCBI)||241, 473|
|PA5090||PA5090||hypothetical protein (NCBI)||439, 473|
|PA5157||PA5157||probable transcriptional regulator (NCBI)||212, 473|
|PA5158||PA5158||probable outer membrane protein precursor (NCBI)||53, 473|
|PA5159||PA5159||multidrug resistance protein (NCBI)||20, 473|
|PA5160||PA5160||drug efflux transporter (NCBI)||366, 473|
|PA5205||PA5205||hypothetical protein (NCBI)||246, 473|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
You can see description of the regulator inside the tooltip when you mouseover. In certain cases the regulatory influence is predicted to be the result of the combination of two influences. These are indicated as combiner in the column labeled "Operator".
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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