Organism : Pseudomonas aeruginosa | Module List :
Regulation information for PA3061(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for PA3061
|Gene||Common Name||Description||Module membership|
|PA0116||PA0116||hypothetical protein (NCBI)||253, 268|
|PA0159||PA0159||probable transcriptional regulator (NCBI)||49, 268|
|PA0166||PA0166||probable transporter (NCBI)||12, 434|
|PA0313||PA0313||probable permease of ABC transporter (NCBI)||268, 306|
|PA0453||PA0453||hypothetical protein (NCBI)||434, 439|
|PA0454||PA0454||hypothetical protein (NCBI)||60, 268|
|PA0710||gloA2||lactoylglutathione lyase (NCBI)||190, 434|
|PA0863||PA0863||probable oxidoreductase (NCBI)||206, 434|
|PA1171||PA1171||probable transglycolase (NCBI)||268, 420|
|PA1326||ilvA2||threonine dehydratase, biosynthetic (NCBI)||268, 291|
|PA1423||PA1423||probable chemotaxis transducer (NCBI)||268, 320|
|PA1608||PA1608||probable chemotaxis transducer (NCBI)||212, 268|
|PA1613||PA1613||hypothetical protein (NCBI)||123, 268|
|PA1797||PA1797||hypothetical protein (NCBI)||26, 434|
|PA1832||PA1832||probable protease (NCBI)||51, 268|
|PA1845||PA1845||hypothetical protein (NCBI)||45, 268|
|PA1848||PA1848||probable major facilitator superfamily (MFS) transporter (NCBI)||408, 434|
|PA1879||PA1879||hypothetical protein (NCBI)||206, 434|
|PA1975||PA1975||hypothetical protein (NCBI)||434, 459|
|PA1979||PA1979||probable two-component sensor (NCBI)||235, 434|
|PA1980||PA1980||probable two-component response regulator (NCBI)||428, 434|
|PA1981||PA1981||hypothetical protein (NCBI)||434, 459|
|PA1982||exaA||quinoprotein alcohol dehydrogenase (NCBI)||434, 459|
|PA2028||PA2028||probable transcriptional regulator (NCBI)||268, 507|
|PA2051||PA2051||probable transmembrane sensor (NCBI)||434, 545|
|PA2567||PA2567||hypothetical protein (NCBI)||26, 268|
|PA2655||PA2655||hypothetical protein (NCBI)||197, 434|
|PA2683||PA2683||serine/threonine dehydratase (NCBI)||49, 268|
|PA2698||PA2698||probable hydrolase (NCBI)||152, 268|
|PA2789||PA2789||hypothetical protein (NCBI)||247, 434|
|PA2808||PA2808||hypothetical protein (NCBI)||407, 434|
|PA2809||PA2809||probable two-component response regulator (NCBI)||407, 434|
|PA2810||PA2810||probable two-component sensor (NCBI)||401, 434|
|PA2859||greB||transcription elongation factor GreB (NCBI)||117, 268|
|PA2907||cobL||precorrin-6y-dependent methyltransferase CobL (NCBI)||268, 442|
|PA3059||pelF||hypothetical protein (NCBI)||156, 434|
|PA3060||pelE||hypothetical protein (NCBI)||311, 434|
|PA3061||pelD||hypothetical protein (NCBI)||268, 434|
|PA3062||pelC||hypothetical protein (NCBI)||156, 434|
|PA3136||PA3136||probable secretion protein (NCBI)||105, 434|
|PA3137||PA3137||probable major facilitator superfamily (MFS) transporter (NCBI)||434, 498|
|PA3215||PA3215||probable transcriptional regulator (NCBI)||268, 528|
|PA3222||PA3222||hypothetical protein (NCBI)||189, 268|
|PA3359||PA3359||hypothetical protein (NCBI)||12, 434|
|PA3855||PA3855||hypothetical protein (NCBI)||220, 268|
|PA3864||PA3864||hypothetical protein (NCBI)||60, 268|
|PA3895||PA3895||probable transcriptional regulator (NCBI)||220, 268|
|PA3934||PA3934||hypothetical protein (NCBI)||268, 380|
|PA4073||PA4073||probable aldehyde dehydrogenase (NCBI)||125, 268|
|PA4109||ampR||transcriptional regulator AmpR (NCBI)||49, 268|
|PA4118||PA4118||hypothetical protein (NCBI)||59, 268|
|PA4135||PA4135||probable transcriptional regulator (NCBI)||268, 315|
|PA4138||tyrS||tyrosyl-tRNA synthetase (NCBI)||268, 326|
|PA4157||PA4157||probable transcriptional regulator (NCBI)||138, 268|
|PA4182||PA4182||hypothetical protein (NCBI)||42, 268|
|PA4543||PA4543||hypothetical protein (NCBI)||268, 528|
|PA4624||PA4624||hypothetical protein (NCBI)||185, 268|
|PA4725||cbrA||two-component sensor CbrA (NCBI)||268, 295|
|PA4784||PA4784||probable transcriptional regulator (NCBI)||9, 268|
|PA4886||PA4886||probable two-component sensor (NCBI)||418, 434|
|PA5197||rimK||ribosomal protein S6 modification protein (NCBI)||53, 268|
|PA5204||argA||N-acetylglutamate synthase (NCBI)||268, 383|
|PA5273||PA5273||hypothetical protein (NCBI)||20, 268|
|PA5282||PA5282||probable major facilitator superfamily (MFS) transporter (NCBI)||330, 434|
|PA5283||PA5283||probable transcriptional regulator (NCBI)||241, 434|
|PA5430||PA5430||hypothetical protein (NCBI)||268, 497|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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