Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
CTP synthase (NCBI)
Functional Annotations (6)
|CTP synthase (UTP-ammonia lyase)||cog/ cog|
|CTP synthase activity||go/ molecular_function|
|pyrimidine nucleotide biosynthetic process||go/ biological_process|
|Pyrimidine metabolism||kegg/ kegg pathway|
|Metabolic pathways||kegg/ kegg pathway|
Regulation information for RSP_0368(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_0368
Module neighborhood information for RSP_0368
|Gene||Common Name||Description||Module membership|
|RSP_0368||RSP_0368||CTP synthase (NCBI)||65, 384|
|RSP_0373||RSP_0373||ABC basic amino acid transporter, inner membrane subunit (NCBI)||65, 114|
|RSP_0374||RSP_0374||ABC basic amino acid transporter, inner membrane subunit (NCBI)||65, 114|
|RSP_0375||RSP_0375||probable glutamine synthetase (NCBI)||65, 67|
|RSP_0407||RSP_0407||putative lactate dehydrogenase (NCBI)||175, 384|
|RSP_0623||RSP_0623||hypothetical protein (NCBI)||65, 263|
|RSP_0624||RSP_0624||hypothetical protein (NCBI)||65, 263|
|RSP_0625||RSP_0625||Putative Maf-like protein (NCBI)||65, 263|
|RSP_0713||RSP_0713||hypothetical protein (NCBI)||96, 384|
|RSP_0722||RSP_0722||transcriptional regulator, AsnC family (NCBI)||254, 384|
|RSP_0874||RSP_0874||Formylmethionine deformylase (NCBI)||47, 65|
|RSP_0875||fmt||methionyl-tRNA formyl transferase (NCBI)||47, 65|
|RSP_0879||RSP_0879||hypothetical protein (NCBI)||7, 65|
|RSP_0894||RSP_0894||hypothetical protein (NCBI)||175, 384|
|RSP_1031||RSP_1031||Endonuclease III (NCBI)||110, 384|
|RSP_1061||RSP_1061||hypothetical protein (NCBI)||65, 208|
|RSP_1099||LspA||signal peptidase II (NCBI)||113, 384|
|RSP_1161||RSP_1161||3'-Phosphadenosine 5'-phosphosulfate 3'-phosphatase (NCBI)||109, 384|
|RSP_1340||RSP_1340||Enoyl-CoA hydratase/isomerase (NCBI)||67, 384|
|RSP_1367||RSP_1367||Nicotinate phosphoribosyltransferase (NCBI)||207, 384|
|RSP_1368||pncA||probable pyrazinamidase/nicotinamidase (NCBI)||136, 384|
|RSP_1379||RSP_1379||Cytosol aminopeptidase (NCBI)||175, 384|
|RSP_1676||era||GTP-binding protein, Era-like (NCBI)||65, 224|
|RSP_1754||RSP_1754||hypothetical protein (NCBI)||72, 384|
|RSP_1983||sqdA||Phospholipid/glycerol acyltransferase (NCBI)||293, 384|
|RSP_2042||RSP_2042||hypothetical protein (NCBI)||65, 358|
|RSP_2044||RSP_2044||ATPase (NCBI)||65, 358|
|RSP_2103||murD||UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI)||256, 384|
|RSP_2190||RSP_2190||hypothetical protein (NCBI)||65, 130|
|RSP_2192||mcmA||Methylmalonyl-CoA mutase (NCBI)||65, 384|
|RSP_2423||RSP_2423||putative Heat shock protein 15 (HSP15) (NCBI)||65, 208|
|RSP_2628||gltX/glnS||glutamyl-/ glutaminyl-tRNA synthetase (NCBI)||65, 267|
|RSP_2629||gid||Glucose-inhibited division protein A (NCBI)||65, 240|
|RSP_2883||pgm||Probable phosphoglucomutase/phosphomannomutase (NCBI)||175, 384|
|RSP_2908||RSP_2908||hypothetical protein (NCBI)||110, 384|
|RSP_2909||RSP_2909||Hydrolase arginase family (NCBI)||110, 384|
|RSP_2924||RSP_2924||ABC branched-chain amino acid transporter family, ATPase subunit (NCBI)||65, 208|
|RSP_2925||RSP_2925||ABC branched-chain amino acid transporter family, ATPase subunit (NCBI)||65, 208|
|RSP_2926||RSP_2926||ABC branched-chain amino acid transporter family, inner membrane subunit (NCBI)||65, 208|
|RSP_2927||RSP_2927||ABC branched-chain amino acid transporter family, inner membrane subunit (NCBI)||65, 263|
|RSP_2928||RSP_2928||hypothetical protein (NCBI)||65, 208|
|RSP_3246||RSP_3246||putative D-alanyl-D-alanine carboxypeptidase (NCBI)||175, 384|
|RSP_3507||RSP_3507||hypothetical protein (NCBI)||381, 384|
|RSP_3645||RSP_3645||hypothetical protein (NCBI)||65, 130|
|RSP_3665||RSP_3665||transcriptional regulator, LuxR family (NCBI)||214, 384|
|RSP_3728||RSP_3728||putative acyl carrier protein phosphodiesterase (NCBI)||354, 384|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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