Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_0453(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_0453
|Gene||Common Name||Description||Module membership|
|RSP_0087||RSP_0087||two component transcriptional regulator, LuxR (NCBI)||70, 81|
|RSP_0167||RSP_0167||hypothetical protein (NCBI)||52, 262|
|RSP_0196||clpX||ATP-dependent protease Clp, ATPase subunit (NCBI)||48, 52|
|RSP_0335||RSP_0335||Probable dicyclicGMP cyclasephosphodiesterase (NCBI)||52, 162|
|RSP_0379||RSP_0379||putative aminotransferase protein (NCBI)||16, 52|
|RSP_0453||RSP_0453||hypothetical protein (NCBI)||52, 81|
|RSP_0550||RSP_0550||putative D-alanyl-D-alanine carboxypeptidase (NCBI)||25, 52|
|RSP_0683||RSP_0683||hypothetical protein (NCBI)||81, 127|
|RSP_0688||RSP_0688||Probable penicillin-binding protein (NCBI)||52, 200|
|RSP_0717||RSP_0717||hypothetical protein (NCBI)||48, 81|
|RSP_0798||RSP_0798||Neutral zinc metallopeptidases (NCBI)||52, 81|
|RSP_0837||RSP_0837||hypothetical protein (NCBI)||52, 349|
|RSP_0886||TyrB||Aminotransferase (NCBI)||52, 207|
|RSP_1070||RSP_1070||hypothetical protein (NCBI)||81, 162|
|RSP_1167||argJ||Glutamate N-acetyltransferase (NCBI)||51, 52|
|RSP_1261||blrB||blue-light receptor of the BLUF-family (NCBI)||81, 162|
|RSP_1356||RSP_1356||hypothetical protein (NCBI)||81, 92|
|RSP_1385||RSP_1385||hypothetical protein (NCBI)||81, 127|
|RSP_1397||RSP_1397||Glutathione S-transferase (NCBI)||52, 81|
|RSP_1493||RSP_1493||Amidase (NCBI)||81, 278|
|RSP_1561||RSP_1561||AMP-forming acyl-CoA synthetase/ligase (NCBI)||16, 52|
|RSP_1663||RSP_1663||putative transcriptional regulator, LacI family (NCBI)||81, 126|
|RSP_1665||RSP_1665||putative RhtB family transporter (NCBI)||81, 85|
|RSP_1666||LytB||4-hydroxy-3-methylbut-2-enyl diphosphate reductase (NCBI)||81, 85|
|RSP_1756||panB||probable 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI)||52, 207|
|RSP_1812||RSP_1812||hypothetical protein (NCBI)||81, 221|
|RSP_1890||RSP_1890||Transcriptional regulator, LysR family (NCBI)||46, 52|
|RSP_2001||trpD||Anthranilate phosphoribosyltransferase (NCBI)||52, 207|
|RSP_2002||trpG||Anthranilate synthase component II (NCBI)||52, 207|
|RSP_2008||argD||Acetylornithine Aminotransferase class-III (NCBI)||52, 195|
|RSP_2181||proX||ABC glycine betaine/L-proline transporter, periplasmic substrate-binding subunit (NCBI)||52, 70|
|RSP_2202||RSP_2202||hypothetical protein (NCBI)||52, 162|
|RSP_2203||RSP_2203||hypothetical protein (NCBI)||16, 52|
|RSP_2242||hisF||Imidazole glycerol phosphate synthase subunit (NCBI)||51, 52|
|RSP_2401||RSP_2401||putative 6-aminohexanoate-cyclic-dimer hydrolase (NCBI)||81, 127|
|RSP_2431||RSP_2431||putative O-acetylhomoserine sulfhydrylase (NCBI)||52, 195|
|RSP_2576||adhI||Alcohol dehydrogenase class III (NCBI)||52, 278|
|RSP_2610||RSP_2610||trancriptional regulator, MerR family (NCBI)||81, 127|
|RSP_2611||ihfA||Histone-like DNA-binding protein (IHF) (NCBI)||81, 127|
|RSP_2695||RSP_2695||Possible peptidoglycan binding protein (NCBI)||81, 207|
|RSP_2846||RSP_2846||putative 3-hydroxyisobutyrate dehydrogenase (NCBI)||81, 207|
|RSP_2886||glgC||ADP-glucose pyrophosphorylase (NCBI)||16, 81|
|RSP_2954||RSP_2954||hypothetical protein (NCBI)||81, 162|
|RSP_2955||RSP_2955||hypothetical protein (NCBI)||81, 162|
|RSP_2962||RSP_2962||Methylmalonic acid semialdehyde dehydrogenase (NCBI)||52, 262|
|RSP_2986||RSP_2986||ArgE/DapE/Acy1 family protein (NCBI)||52, 71|
|RSP_3069||RSP_3069||NADPH-dependent FMN reductase (NCBI)||81, 207|
|RSP_3589||ihfB||Integration host factor beta-subunit (NCBI)||48, 81|
|RSP_3730||RSP_3730||putative glutathione S-transferase (NCBI)||81, 207|
|RSP_3831||cox15||putative cytochrome oxidase assembly factor (NCBI)||52, 195|
|RSP_3832||cxp||putative thermostable carboxypeptidase 1 (NCBI)||1, 52|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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