Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_0687(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_0687
Module neighborhood information for RSP_0687
|Gene||Common Name||Description||Module membership|
|RSP_0366||RSP_0366||Adenylosuccinate synthetase (NCBI)||192, 258|
|RSP_0448||RSP_0448||EF-Tu; elongation factor Tu (NCBI)||209, 271|
|RSP_0633||RSP_0633||UDP-N-acetylglucosamine enolpyruvyl transferase (NCBI)||192, 349|
|RSP_0684||RSP_0684||Possible oxidoreductase; Short-chain dehydrogenase/reductase SDR (NCBI)||196, 209|
|RSP_0685||RSP_0685||Possible ribosomal RNA small subunit methyltransferase C RsmC (NCBI)||209, 340|
|RSP_0686||RSP_0686||ATP-dependent Clp protease adaptor protein clpS (NCBI)||209, 227|
|RSP_0687||RSP_0687||Predicted hydrolase (haloacid dehalogenase (HAD) superfamily) (NCBI)||192, 209|
|RSP_0725||RSP_0725||Thioredoxin, thioldisulfide interchange protein (NCBI)||51, 192|
|RSP_0744||RSP_0744||DNA-3-methyladenine glycosylase I (NCBI)||192, 349|
|RSP_0764||RSP_0764||Multi Antimicrobial Extrusion (MATE) family efflux pump NorM (NCBI)||192, 349|
|RSP_0818||carB||carbamoyl phosphate synthase large subunit (RefSeq)||209, 383|
|RSP_0819||rhlE2||DEAD/DEAH box helicase (NCBI)||209, 316|
|RSP_0832||RSP_0832||Putative GTP-binding protein (NCBI)||166, 192|
|RSP_0916||pmbA||Putative PmbA/TldD protein invoved in modulation of DNA gyrase (NCBI)||192, 218|
|RSP_0934||gpmI||Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI)||192, 299|
|RSP_1062||RSP_1062||ATPases of the PP superfamily (NCBI)||110, 209|
|RSP_1065||RSP_1065||hypothetical protein (NCBI)||130, 209|
|RSP_1068||argB||acetylglutamate kinase (NCBI)||109, 192|
|RSP_1075||RSP_1075||Short-chain dehydrogenase/reductase SDR (NCBI)||209, 218|
|RSP_1108||TruB||tRNA pseudouridine synthase B (NCBI)||209, 383|
|RSP_1110||RSP_1110||hypothetical protein (NCBI)||209, 271|
|RSP_1131||dapD||2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (NCBI)||25, 192|
|RSP_1150||bacA||Bacitracin Resistance Protein (NCBI)||192, 349|
|RSP_1151||RSP_1151||NADH-ubiquinone oxidoreductase (NCBI)||192, 349|
|RSP_1152||rnd||Ribonuclease D (NCBI)||192, 356|
|RSP_1153||GutQ||Sugar phosphate Isomerase (NCBI)||109, 192|
|RSP_1197||HemH||Ferrochelatase (NCBI)||209, 311|
|RSP_1202||TrmA||putative RNA SAM-dependent methyltransferase, TrmA family (NCBI)||47, 209|
|RSP_1203||RSP_1203||ABC multidrug efflux pump, fused ATPase and inner membrane subunits (NCBI)||196, 209|
|RSP_1218||mutS||DNA mismatch repair protein MutS (NCBI)||209, 299|
|RSP_1221||rph||ribonuclease PH (NCBI)||192, 258|
|RSP_1222||ham1||putative Ham1p_like protein, Ham1 family (NCBI)||192, 258|
|RSP_1346||RSP_1346||DNA gyrase, subunit B (NCBI)||192, 372|
|RSP_1376||asd||putative aspartate-semialdehyde dehydrogenase (NCBI)||166, 192|
|RSP_1390||RSP_1390||Putative transporter, DMT superfamily (NCBI)||192, 331|
|RSP_1426||RSP_1426||RNA-binding region RNP-1 (NCBI)||209, 316|
|RSP_1427||RSP_1427||hypothetical protein (NCBI)||209, 316|
|RSP_1484||RSP_1484||hypothetical protein (NCBI)||209, 268|
|RSP_1485||RSP_1485||ATP-dependent RNA helicase (NCBI)||209, 268|
|RSP_1580||lgt||Prolipoprotein diacylglyceryl transferase (NCBI)||192, 339|
|RSP_1795||serS||Probable Seryl-tRNA synthetase (NCBI)||109, 192|
|RSP_1799||secF||protein-export membrane protein SecF (NCBI)||209, 224|
|RSP_1831||thrC||Threonine synthase (NCBI)||109, 192|
|RSP_1970||RSP_1970||Phosphoribosylglycinamide formyltransferase (NCBI)||84, 209|
|RSP_2009||argF||Aspartate/ornithine carbamoyltransferase (NCBI)||192, 372|
|RSP_2118||recN||DNA repair protein RecN (NCBI)||209, 339|
|RSP_2552||exoU||Glycosyl transferase, family 2 (NCBI)||209, 316|
|RSP_2647||RSP_2647||Predicted SAM-dependent methyltransferases (NCBI)||192, 372|
|RSP_2648||RSP_2648||hypothetical protein (NCBI)||209, 383|
|RSP_2968||RSP_2968||Probable dihydrolipoamide dehydrogenase (NCBI)||184, 192|
|RSP_3004||RSP_3004||Possible Protein kinase (NCBI)||209, 214|
|RSP_3273||RSP_3273||ABC multidrug/carbohydrate efflux transporter, inner membrane subunit (NCBI)||116, 209|
|RSP_3274||RSP_3274||ABC multidrug/carbohydrate efflux transporter, ATPase subunit (NCBI)||116, 209|
|RSP_3591||RSP_3591||cytidylate kinase (NCBI)||209, 271|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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