Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3143(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_3143
|Gene||Common Name||Description||Module membership|
|RSP_0027||RSP_0027||hypothetical protein (NCBI)||62, 251|
|RSP_0028||RSP_0028||Putative short-chain dehydrogenase/reductase (NCBI)||246, 251|
|RSP_1142||RSP_1142||hypothetical membrane protein (NCBI)||44, 325|
|RSP_1373||RSP_1373||Major facilitator superfamily (MFS) transporter (NCBI)||28, 44|
|RSP_1689||RSP_1689||hypothetical protein (NCBI)||28, 44|
|RSP_2080||RSP_2080||Putative Tyrosine recombinase (NCBI)||251, 340|
|RSP_2166||putA||Bifunctional putA protein; Proline dehydrogenase / Delta-1-pyrroline-5-carboxylate dehydrogenase (NCBI)||38, 251|
|RSP_2250||RSP_2250||hypothetical protein (NCBI)||44, 340|
|RSP_2539||RSP_2539||ABC transporter, ATPase subunit (NCBI)||17, 44|
|RSP_2758||RSP_2758||hypothetical protein (NCBI)||246, 251|
|RSP_2760||RSP_2760||hypothetical protein (NCBI)||246, 251|
|RSP_2992||RSP_2992||hypothetical protein (NCBI)||44, 355|
|RSP_3143||RSP_3143||hypothetical protein (NCBI)||44, 251|
|RSP_3144||RSP_3144||hypothetical protein (NCBI)||44, 251|
|RSP_3145||ttdB||Putative Tartrate dehydratase beta subunit (NCBI)||44, 251|
|RSP_3146||ttdA||Putative Tartrate dehydratase alpha subunit (NCBI)||44, 251|
|RSP_3147||sdhA||putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit (NCBI)||44, 251|
|RSP_3148||RSP_3148||putative succinate dehydrogenase cytochrome b-556 subunit (NCBI)||44, 251|
|RSP_3149||RSP_3149||putative succinate dehydrogenase membrane anchor (NCBI)||44, 251|
|RSP_3150||frdB||Succinate dehydrogenase/fumarate reductase Fe-S protein subunit (NCBI)||44, 251|
|RSP_3153||RSP_3153||ABC nitrate/sulfonate/bicarbonate transporter family, inner membrane subunit (NCBI)||110, 251|
|RSP_3154||RSP_3154||ABC nitrate/sulfonate/bicarbonate transporter family, ATPase subunit (NCBI)||105, 251|
|RSP_3155||RSP_3155||Thiamine pyrophosphate-requiring enzyme (NCBI)||251, 273|
|RSP_3334||RSP_3334||HyuE hydantoin racemase (NCBI)||44, 103|
|RSP_3335||RSP_3335||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3336||RSP_3336||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3338||RSP_3338||ABC spermidine/putrescine transporter, ATPase subunit (NCBI)||236, 251|
|RSP_3420||RSP_3420||Methyl-accepting chemotaxis protein (NCBI)||77, 251|
|RSP_3422||RSP_3422||hypothetical protein (NCBI)||251, 323|
|RSP_3500||RSP_3500||ABC sugar transporter, periplasmic binding protein (NCBI)||44, 303|
|RSP_3501||RSP_3501||ABC sugar transporter, inner membrane subunit (NCBI)||44, 303|
|RSP_3502||RSP_3502||ABC sugar transporter, inner membrane subunit (NCBI)||44, 303|
|RSP_3503||RSP_3503||ABC sugar transporter, fused ATPase domains (NCBI)||44, 303|
|RSP_3505||RSP_3505||transcriptional regulator, DeoR family (NCBI)||44, 303|
|RSP_3506||RSP_3506||probable sugar kinase, EGGY family protein (NCBI)||44, 303|
|RSP_3574||hutH||putative histidine ammonia-lyase (NCBI)||44, 105|
|RSP_3675||RSP_3675||Esterase/lipase/thioesterase (NCBI)||44, 323|
|RSP_3676||RSP_3676||transcriptional regulator, GntR family (NCBI)||44, 105|
|RSP_3677||RSP_3677||ABC sugar transporter, ATPase subunit (NCBI)||44, 323|
|RSP_3700||RSP_3700||transcriptional regulator, LacI family (NCBI)||157, 251|
|RSP_3701||RSP_3701||ABC sugar transporter, periplasmic binding protein (NCBI)||157, 251|
|RSP_3702||RSP_3702||ABC sugar transporter, ATPase subunit (NCBI)||157, 251|
|RSP_3703||RSP_3703||ABC sugar transporter, inner membrane subunit (NCBI)||157, 251|
|RSP_3704||RSP_3704||ribitol 2-dehydrogenase (NCBI)||157, 251|
|RSP_3705||RSP_3705||D-ribulokinase (NCBI)||157, 251|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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