Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2250(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_2250
|Gene||Common Name||Description||Module membership|
|RSP_0008||RSP_0008||possible transporter, DME family, DMT superfamily (NCBI)||323, 340|
|RSP_0202||RSP_0202||putative membrane protein (NCBI)||221, 340|
|RSP_0551||RSP_0551||putative thymidylate kinase (NCBI)||234, 340|
|RSP_0560||priA||Probable pimosomal protein N' (NCBI)||54, 340|
|RSP_0685||RSP_0685||Possible ribosomal RNA small subunit methyltransferase C RsmC (NCBI)||209, 340|
|RSP_0937||RSP_0937||Alpha amylase, catalytic subdomain (NCBI)||40, 340|
|RSP_1057||merA1||Putative mercuric reductase protein (NCBI)||134, 340|
|RSP_1074||uvrC||Excinuclease ABC, C subunit (NCBI)||208, 340|
|RSP_1142||RSP_1142||hypothetical membrane protein (NCBI)||44, 325|
|RSP_1275||RSP_1275||Crp-Fnr family transciptional regulator (NCBI)||215, 340|
|RSP_1286||cbbR||RuBisCO operon transcriptional regulator, CbbR (NCBI)||54, 340|
|RSP_1321||fliR||Flagellar biosynthesis pathway, component FliR (NCBI)||146, 340|
|RSP_1364||RSP_1364||hypothetical protein (NCBI)||146, 340|
|RSP_1373||RSP_1373||Major facilitator superfamily (MFS) transporter (NCBI)||28, 44|
|RSP_1689||RSP_1689||hypothetical protein (NCBI)||28, 44|
|RSP_2080||RSP_2080||Putative Tyrosine recombinase (NCBI)||251, 340|
|RSP_2223||RSP_2223||AcrB/AcrD/AcrF multidrug efflux pump (NCBI)||171, 340|
|RSP_2240||RSP_2240||hypothetical protein (NCBI)||213, 340|
|RSP_2250||RSP_2250||hypothetical protein (NCBI)||44, 340|
|RSP_2390||acuC1||putative Acetoin utilization protein (NCBI)||126, 340|
|RSP_2539||RSP_2539||ABC transporter, ATPase subunit (NCBI)||17, 44|
|RSP_2650||RSP_2650||hypothetical protein (NCBI)||121, 340|
|RSP_2678||RSP_2678||hypothetical protein (NCBI)||215, 340|
|RSP_2850||mfd||transcription-repair coupling factor (helicase) (NCBI)||54, 340|
|RSP_2884||glgX||glycogen debranching enzyme (NCBI)||233, 340|
|RSP_2992||RSP_2992||hypothetical protein (NCBI)||44, 355|
|RSP_3105||RSP_3105||PAS sensor protein (NCBI)||83, 340|
|RSP_3143||RSP_3143||hypothetical protein (NCBI)||44, 251|
|RSP_3144||RSP_3144||hypothetical protein (NCBI)||44, 251|
|RSP_3145||ttdB||Putative Tartrate dehydratase beta subunit (NCBI)||44, 251|
|RSP_3146||ttdA||Putative Tartrate dehydratase alpha subunit (NCBI)||44, 251|
|RSP_3147||sdhA||putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit (NCBI)||44, 251|
|RSP_3148||RSP_3148||putative succinate dehydrogenase cytochrome b-556 subunit (NCBI)||44, 251|
|RSP_3149||RSP_3149||putative succinate dehydrogenase membrane anchor (NCBI)||44, 251|
|RSP_3150||frdB||Succinate dehydrogenase/fumarate reductase Fe-S protein subunit (NCBI)||44, 251|
|RSP_3250||RSP_3250||ABC peptide transporter, inner membrane subunit (NCBI)||267, 340|
|RSP_3334||RSP_3334||HyuE hydantoin racemase (NCBI)||44, 103|
|RSP_3335||RSP_3335||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3336||RSP_3336||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3418||RSP_3418||transcriptional regulator, AraC family (NCBI)||146, 340|
|RSP_3500||RSP_3500||ABC sugar transporter, periplasmic binding protein (NCBI)||44, 303|
|RSP_3501||RSP_3501||ABC sugar transporter, inner membrane subunit (NCBI)||44, 303|
|RSP_3502||RSP_3502||ABC sugar transporter, inner membrane subunit (NCBI)||44, 303|
|RSP_3503||RSP_3503||ABC sugar transporter, fused ATPase domains (NCBI)||44, 303|
|RSP_3505||RSP_3505||transcriptional regulator, DeoR family (NCBI)||44, 303|
|RSP_3506||RSP_3506||probable sugar kinase, EGGY family protein (NCBI)||44, 303|
|RSP_3574||hutH||putative histidine ammonia-lyase (NCBI)||44, 105|
|RSP_3610||RSP_3610||hypothetical protein (NCBI)||177, 340|
|RSP_3675||RSP_3675||Esterase/lipase/thioesterase (NCBI)||44, 323|
|RSP_3676||RSP_3676||transcriptional regulator, GntR family (NCBI)||44, 105|
|RSP_3677||RSP_3677||ABC sugar transporter, ATPase subunit (NCBI)||44, 323|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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