Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3789(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_3789
|Gene||Common Name||Description||Module membership|
|RSP_0227||RSP_0227||hypothetical protein (NCBI)||88, 189|
|RSP_0229||RSP_0229||multidrug efflux pump, MF Superfamily (NCBI)||88, 188|
|RSP_0494||hypF||hydrogenase maturation factor F (NCBI)||292, 337|
|RSP_0616||RSP_0616||transcriptional regulator, AraC family (NCBI)||83, 88|
|RSP_0666||RSP_0666||Probable cell cycle protein (NCBI)||88, 326|
|RSP_0858||RSP_0858||Putative transporter, RhaT family, DMT superfamily (NCBI)||59, 88|
|RSP_1115||RSP_1115||hypothetical protein (NCBI)||246, 292|
|RSP_1118||RSP_1118||group 1 glycosyltransferase (NCBI)||246, 292|
|RSP_1450||RSP_1450||Inositol monophosphatase family protein (NCBI)||105, 292|
|RSP_1501||RSP_1501||Antisigma-factor antagonist (STAS) domain protein (NCBI)||74, 292|
|RSP_1509||RSP_1509||Glycoprotease (M22) metalloprotease (NCBI)||292, 300|
|RSP_1660||RSP_1660||putative ParB-like nuclease (NCBI)||88, 380|
|RSP_1661||RSP_1661||hypothetical protein (NCBI)||292, 300|
|RSP_1923||bioB||Biotin synthase (NCBI)||62, 292|
|RSP_2061||RSP_2061||hypothetical protein (NCBI)||292, 379|
|RSP_2315||RSP_2315||hypothetical protein (NCBI)||105, 292|
|RSP_2501||RSP_2501||hypothetical protein (NCBI)||238, 292|
|RSP_2732||RSP_2732||Major facilitator superfamily (MFS) transporter (NCBI)||68, 292|
|RSP_2765||RSP_2765||hypothetical protein (NCBI)||88, 285|
|RSP_2867||rpoN4||Sigma-54 factor family protein (NCBI)||282, 292|
|RSP_3064||RSP_3064||transcriptional regulator, DeoR family (NCBI)||235, 292|
|RSP_3108||RSP_3108||Putative methyl accepting chemotaxis protein (NCBI)||246, 292|
|RSP_3128||RSP_3128||hypothetical protein (NCBI)||292, 337|
|RSP_3135||RSP_3135||ppkA-related protein (NCBI)||244, 292|
|RSP_3136||RSP_3136||hypothetical protein (NCBI)||88, 130|
|RSP_3152||RSP_3152||ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein (NCBI)||88, 105|
|RSP_3393||RSP_3393||ABC opine/polyamine transporter, inner membrane subunit (NCBI)||77, 88|
|RSP_3395||RSP_3395||ABC opine/polyamine transporter, inner membrane subunit (NCBI)||88, 170|
|RSP_3396||RSP_3396||ABC opine/polyamine transporter, ATPase subunit (NCBI)||88, 170|
|RSP_3399||RSP_3399||carbon-nitrogen hydrolase family protein (NCBI)||88, 170|
|RSP_3471||RSP_3471||hypothetical protein (NCBI)||147, 292|
|RSP_3613||RSP_3613||Glycosyltransferase (NCBI)||238, 292|
|RSP_3670||RSP_3670||putative oxidoreductase myo-inositol 2-dehydrogenase (NCBI)||88, 105|
|RSP_3671||RSP_3671||putative D-tagatose 3-epimerase (NCBI)||88, 115|
|RSP_3672||RSP_3672||ABC sugar transporter, inner membrane subunit (NCBI)||88, 115|
|RSP_3673||RSP_3673||ABC sugar transporter, inner membrane subunit (NCBI)||88, 115|
|RSP_3689||yphD||ABC sugar transporter, inner membrane subunit (NCBI)||57, 88|
|RSP_3743||speB1||putative agmatinase (NCBI)||61, 292|
|RSP_3746||RSP_3746||hypothetical protein (NCBI)||61, 292|
|RSP_3764||RSP_3764||hypothetical protein (NCBI)||292, 347|
|RSP_3780||RSP_3780||hypothetical protein (NCBI)||147, 292|
|RSP_3789||RSP_3789||hypothetical protein (NCBI)||88, 292|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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