Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2315(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_2315
|Gene||Common Name||Description||Module membership|
|RSP_0494||hypF||hydrogenase maturation factor F (NCBI)||292, 337|
|RSP_1115||RSP_1115||hypothetical protein (NCBI)||246, 292|
|RSP_1118||RSP_1118||group 1 glycosyltransferase (NCBI)||246, 292|
|RSP_1262||RSP_1262||response regulator receiver protein (NCBI)||105, 125|
|RSP_1450||RSP_1450||Inositol monophosphatase family protein (NCBI)||105, 292|
|RSP_1451||RSP_1451||ABC peptide/nickel/opine transporter, periplasmic substrate-binding protein (NCBI)||17, 105|
|RSP_1453||RSP_1453||ABC peptide/nickel/opine transporter, inner membrane subunit (NCBI)||17, 105|
|RSP_1454||RSP_1454||ABC peptide/nickel/opine transporter, fused ATPase subunits (NCBI)||17, 105|
|RSP_1455||RSP_1455||putative N-carbamoyl-beta-alanine amidohydrolase (NCBI)||17, 105|
|RSP_1456||RSP_1456||hypothetical protein (NCBI)||31, 105|
|RSP_1457||RSP_1457||putative choline kinase (NCBI)||17, 105|
|RSP_1501||RSP_1501||Antisigma-factor antagonist (STAS) domain protein (NCBI)||74, 292|
|RSP_1509||RSP_1509||Glycoprotease (M22) metalloprotease (NCBI)||292, 300|
|RSP_1661||RSP_1661||hypothetical protein (NCBI)||292, 300|
|RSP_1876||RSP_1876||hypothetical protein (NCBI)||105, 353|
|RSP_1923||bioB||Biotin synthase (NCBI)||62, 292|
|RSP_2032||RSP_2032||putative hypothetical Gifsy-1 prophage protein (NCBI)||62, 105|
|RSP_2036||RSP_2036||putative ECF/RNA polymerase sigma factor protein (NCBI)||11, 105|
|RSP_2061||RSP_2061||hypothetical protein (NCBI)||292, 379|
|RSP_2157||RSP_2157||ABC transporter, inner membrane subunit (NCBI)||105, 114|
|RSP_2315||RSP_2315||hypothetical protein (NCBI)||105, 292|
|RSP_2501||RSP_2501||hypothetical protein (NCBI)||238, 292|
|RSP_2732||RSP_2732||Major facilitator superfamily (MFS) transporter (NCBI)||68, 292|
|RSP_2750||RSP_2750||hypothetical protein (NCBI)||77, 105|
|RSP_2751||RSP_2751||hypothetical protein (NCBI)||105, 229|
|RSP_2753||RSP_2753||hypothetical protein (NCBI)||77, 105|
|RSP_2754||RSP_2754||hypothetical protein (NCBI)||105, 116|
|RSP_2867||rpoN4||Sigma-54 factor family protein (NCBI)||282, 292|
|RSP_3057||RSP_3057||ABC proline/glycine betaine transporter, ATPase subunit (NCBI)||105, 342|
|RSP_3058||RSP_3058||ABC proline/glycine betaine transporter, inner membrane subunit (NCBI)||105, 342|
|RSP_3059||RSP_3059||ABC proline/glycine betaine transporter, periplasmic substrate-binding protein (NCBI)||105, 342|
|RSP_3064||RSP_3064||transcriptional regulator, DeoR family (NCBI)||235, 292|
|RSP_3106||RSP_3106||Cation efflux transporter, CDF family (NCBI)||105, 288|
|RSP_3108||RSP_3108||Putative methyl accepting chemotaxis protein (NCBI)||246, 292|
|RSP_3128||RSP_3128||hypothetical protein (NCBI)||292, 337|
|RSP_3135||RSP_3135||ppkA-related protein (NCBI)||244, 292|
|RSP_3151||RSP_3151||ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein (NCBI)||105, 110|
|RSP_3152||RSP_3152||ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein (NCBI)||88, 105|
|RSP_3154||RSP_3154||ABC nitrate/sulfonate/bicarbonate transporter family, ATPase subunit (NCBI)||105, 251|
|RSP_3421||RSP_3421||hypothetical protein (NCBI)||77, 105|
|RSP_3471||RSP_3471||hypothetical protein (NCBI)||147, 292|
|RSP_3574||hutH||putative histidine ammonia-lyase (NCBI)||44, 105|
|RSP_3613||RSP_3613||Glycosyltransferase (NCBI)||238, 292|
|RSP_3655||RSP_3655||Dihydrodipicolinate synthase/N-acetylneuraminate lyase (NCBI)||105, 157|
|RSP_3656||RSP_3656||NAD-dependent aldehyde dehydrogenases (NCBI)||31, 105|
|RSP_3658||hpcH||putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (NCBI)||105, 316|
|RSP_3670||RSP_3670||putative oxidoreductase myo-inositol 2-dehydrogenase (NCBI)||88, 105|
|RSP_3676||RSP_3676||transcriptional regulator, GntR family (NCBI)||44, 105|
|RSP_3743||speB1||putative agmatinase (NCBI)||61, 292|
|RSP_3746||RSP_3746||hypothetical protein (NCBI)||61, 292|
|RSP_3764||RSP_3764||hypothetical protein (NCBI)||292, 347|
|RSP_3780||RSP_3780||hypothetical protein (NCBI)||147, 292|
|RSP_3785||RSP_3785||putative bacteriophage-related protein (NCBI)||91, 105|
|RSP_3789||RSP_3789||hypothetical protein (NCBI)||88, 292|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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