Desulfovibrio vulgaris Hildenborough Module 33 Residual: 0.49 | Syntrophy Portal

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Summary

Residual: 0.49 Score: -32.475 version: dvh_cmonkey_11_Mar_02

Members

DVU0126 ABC transporter, ATP-binding protein Details for DVU0126 - ABC transporter, ATP-binding protein GO Terms: GO:0005524, GO:0016887, GO:0016020, GO:0006810 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0126 Tuberculist Genomic Region	DVU1934 Phosphonate ABC transporter, permease protein Details for DVU1934 - Phosphonate ABC transporter, permease protein GO Terms: GO:0005887, GO:0015604 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1934 Tuberculist Genomic Region
DVU0541 Lipoprotein, putative Details for DVU0541 - Lipoprotein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0541 Tuberculist Genomic Region	DVU2060 Uncharacterized protein Details for DVU2060 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2060 Tuberculist Genomic Region
DVU0802 Uncharacterized protein Details for DVU0802 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0802 Tuberculist Genomic Region	DVU2087 Uncharacterized protein Details for DVU2087 - Uncharacterized protein GO Terms: GO:0005524, GO:0003723, GO:0004826 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2087 Tuberculist Genomic Region
DVU0973 4-hydroxybenzoate octaprenyltransferase, putative Details for DVU0973 - 4-hydroxybenzoate octaprenyltransferase, putative GO Terms: GO:0016021, GO:0004659 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0973 Tuberculist Genomic Region	DVU2088 Membrane protein, putative Details for DVU2088 - Membrane protein, putative GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2088 Tuberculist Genomic Region
DVU0993 Uncharacterized protein Details for DVU0993 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0993 Tuberculist Genomic Region	DVU2306 Phosphate transporter family protein Details for DVU2306 - Phosphate transporter family protein GO Terms: GO:0005315, GO:0016020, GO:0006817 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2306 Tuberculist Genomic Region
DVU1056 Putative ABC transporter ATP-binding protein DVU_1056 Details for DVU1056 - Putative ABC transporter ATP-binding protein DVU_1056 GO Terms: GO:0005524, GO:0016887, GO:0005886, GO:0006810 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1056 Tuberculist Genomic Region	DVU2447 Uncharacterized protein Details for DVU2447 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2447 Tuberculist Genomic Region
DVU1150 Uncharacterized protein Details for DVU1150 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1150 Tuberculist Genomic Region	DVU2700 Uncharacterized protein Details for DVU2700 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2700 Tuberculist Genomic Region
DVU1172 Uncharacterized protein Details for DVU1172 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1172 Tuberculist Genomic Region	DVU2949 Membrane protein, putative Details for DVU2949 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2949 Tuberculist Genomic Region
DVU1173 Integral membrane protein MviN Details for DVU1173 - Integral membrane protein MviN GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1173 Tuberculist Genomic Region	DVU3038 Uncharacterized protein Details for DVU3038 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3038 Tuberculist Genomic Region
DVU1280 Uncharacterized protein Details for DVU1280 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1280 Tuberculist Genomic Region	DVU3039 Uncharacterized protein Details for DVU3039 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3039 Tuberculist Genomic Region
DVU1347 Peptidase, M23/M37 family Details for DVU1347 - Peptidase, M23/M37 family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1347 Tuberculist Genomic Region	DVU3115 Uncharacterized protein Details for DVU3115 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3115 Tuberculist Genomic Region
DVU1744 DNA-binding protein Details for DVU1744 - DNA-binding protein GO Terms: GO:0043565 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1744 Tuberculist Genomic Region	DVU3175 Membrane protein, putative Details for DVU3175 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3175 Tuberculist Genomic Region
DVU1762 Membrane protein, putative Details for DVU1762 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1762 Tuberculist Genomic Region	DVU3180 GGDEF domain protein Details for DVU3180 - GGDEF domain protein GO Terms: GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3180 Tuberculist Genomic Region
DVU1857 Methyl-accepting chemotaxis protein Details for DVU1857 - Methyl-accepting chemotaxis protein GO Terms: GO:0016021, GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1857 Tuberculist Genomic Region	DVU2627 Conserved domain protein Details for DVU2627 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2627 Tuberculist Genomic Region
DVU1908 Pyridoxine 5'-phosphate synthase Details for DVU1908 - Pyridoxine 5'-phosphate synthase GO Terms: GO:0005737, GO:0033856, GO:0008615 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1908 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 510 Motif 2:

e-value: 230

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1063 Transcriptional regulatory protein	down-regulates	-0.15	DVU1063
DVU2633 Transcriptional regulator, putative	up-regulates	0.15	DVU2633
DVU3023 Sigma-54 dependent DNA-binding response regulator	up-regulates	0.12	DVU3023
DVUA0024 Sigma-54 interaction domain protein	down-regulates	-0.14	DVUA0024
DVUA0143 Nif-specific regulatory protein	down-regulates	-0.14	DVUA0143

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0005315	inorganic phosphate transmembrane transp...	3	0.01	1	0.0140
MF	GO:1901677	phosphate transmembrane transporter acti...	3	0.01	1	0.0140
MF	GO:0015291	secondary active transmembrane transport...	8	0.04	1	0.0370

Essentiality

Comments

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