Desulfovibrio vulgaris Hildenborough Module 335 Residual: 0.32 | Syntrophy Portal

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Summary

Residual: 0.32 Score: -89.7713 version: dvh_cmonkey_11_Mar_02

Members

DVUA0152 Conserved domain protein Details for DVUA0152 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0152 Tuberculist Genomic Region	DVUA0037 Sugar transferase domain protein Details for DVUA0037 - Sugar transferase domain protein GO Terms: GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0037 Tuberculist Genomic Region
DVU2846 Uncharacterized protein Details for DVU2846 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2846 Tuberculist Genomic Region	DVUA0041 Conserved domain protein Details for DVUA0041 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0041 Tuberculist Genomic Region
DVUA0010 Ferredoxin, 2fe-2s Details for DVUA0010 - Ferredoxin, 2fe-2s GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0010 Tuberculist Genomic Region	DVUA0043 Polysaccharide deacetylase family protein Details for DVUA0043 - Polysaccharide deacetylase family protein GO Terms: GO:0005975, GO:0016810 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0043 Tuberculist Genomic Region
DVUA0012 Nitrogenase protein alpha chain Details for DVUA0012 - Nitrogenase protein alpha chain GO Terms: GO:0018697, GO:0051536, GO:0046872, GO:0016612, GO:0009399, GO:0016163 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0012 Tuberculist Genomic Region	DVUA0051 Glycosyl transferase, group 1 family protein Details for DVUA0051 - Glycosyl transferase, group 1 family protein GO Terms: GO:0009058, GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0051 Tuberculist Genomic Region
DVUA0015 Nitrogenase iron protein Details for DVUA0015 - Nitrogenase iron protein GO Terms: GO:0051539, GO:0005524, GO:0018697, GO:0046872, GO:0016612, GO:0009399, GO:0016163 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0015 Tuberculist Genomic Region	DVUA0064 Conserved domain protein Details for DVUA0064 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0064 Tuberculist Genomic Region
DVUA0024 Sigma-54 interaction domain protein Details for DVUA0024 - Sigma-54 interaction domain protein GO Terms: GO:0005524, GO:0003677, GO:0006355, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0024 Tuberculist Genomic Region	DVUA0090 Membrane protein, putative Details for DVUA0090 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0090 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 4800 Motif 2:

e-value: 9400

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
[field_regulator_taxonomy_regulat_1]	up-regulates	0.19	Co-culture
DVU0596 DNA-binding response regulator LytR	up-regulates	0.32	DVU0596
DVU0813 Heat-inducible transcription repressor HrcA	up-regulates	0.33	DVU0813
DVU1402 Transcriptional regulator, LysR family	up-regulates	0.16	DVU1402
DVU1744 DNA-binding protein	down-regulates	-0.36	DVU1744
DVU2547 Transcriptional regulator, putative	up-regulates	0.14	DVU2547
DVU2802 Transcriptional regulator, GntR family	up-regulates	0.38	DVU2802
DVU3142 Sigma-54 dependent transcriptional regulator	up-regulates	0.12	DVU3142
DVU3334 Sigma-54 dependent DNA-binding response regulator	up-regulates	0.13	DVU3334

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016730	oxidoreductase activity, acting on iron-...	5	0.02	1	0.0155

Essentiality

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