Methanococcus maripaludis S2 Module 25 Residual: 0.31

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Summary

Residual: 0.31 Score: -17.2841 version: mmp_cmonkey_11_Oct_11

Members

MMP0026 DNA-directed DNA polymerase II large subunit (NCBI)

Details for MMP0026 - DNA-directed DNA polymerase II large subunit (NCBI)

GO Terms: GO:0006308, GO:0006260, GO:0003677, GO:0003893, GO:0016449, GO:0019984, GO:0003889, GO:0003894, GO:0015999, GO:0016450, GO:0003890, GO:0003895, GO:0016000, GO:0016451, GO:0003891, GO:0016448, GO:0016452

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0026

Tuberculist Genomic Region

MMP0921 conserved hypothetical protein (NCBI)

Details for MMP0921 - conserved hypothetical protein (NCBI)

GO Terms: GO:0004526

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0921

Tuberculist Genomic Region

MMP0133 IMP dehydrogenase (NCBI)

Details for MMP0133 - IMP dehydrogenase (NCBI)

GO Terms: GO:0006177, GO:0003938

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0133

Tuberculist Genomic Region

MMP0953 precorrin-3B C17-methyltransferase (NCBI)

Details for MMP0953 - precorrin-3B C17-methyltransferase (NCBI)

GO Terms: GO:0009236, GO:0030789

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0953

Tuberculist Genomic Region

MMP0243 conserved hypothetical protein (NCBI)

Details for MMP0243 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0243

Tuberculist Genomic Region

MMP1011 Glutamyl-tRNA synthetase (NCBI)

Details for MMP1011 - Glutamyl-tRNA synthetase (NCBI)

GO Terms: GO:0006424, GO:0009332, GO:0005524, GO:0004818

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1011

Tuberculist Genomic Region

MMP0284 translation inititation factor aIF2 (NCBI)

Details for MMP0284 - translation inititation factor aIF2 (NCBI)

GO Terms: GO:0006413, GO:0005622, GO:0003924, GO:0003743, GO:0005525

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0284

Tuberculist Genomic Region

MMP1014

Details for MMP1014 -

GO Terms: GO:0003824, GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1014

Tuberculist Genomic Region

MMP0315 indolepyruvate oxidoreductase subunit beta 1 (NCBI)

Details for MMP0315 - indolepyruvate oxidoreductase subunit beta 1 (NCBI)

GO Terms: GO:0006118, GO:0043805

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0315

Tuberculist Genomic Region

MMP1195 putative cytoplasmic protein (NCBI)

Details for MMP1195 - putative cytoplasmic protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1195

Tuberculist Genomic Region

MMP0316 indolepyruvate oxidoreductase subunit alpha 1 (NCBI)

Details for MMP0316 - indolepyruvate oxidoreductase subunit alpha 1 (NCBI)

GO Terms: GO:0006118, GO:0051536, GO:0009055, GO:0030976, GO:0043805

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0316

Tuberculist Genomic Region

MMP1356 conserved hypothetical protein (NCBI)

Details for MMP1356 - conserved hypothetical protein (NCBI)

GO Terms: GO:0009435, GO:0005737, GO:0003952, GO:0004808

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1356

Tuberculist Genomic Region

MMP0412 Protein of unknown function UPF0004:Deoxyribonuclease/rho motif-related TRAM (NCBI)

Details for MMP0412 - Protein of unknown function UPF0004:Deoxyribonuclease/rho motif-related TRAM (NCBI)

GO Terms: GO:0008152, GO:0032440, GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0412

Tuberculist Genomic Region

MMP1425 Protein of unknown function DUF127 (NCBI)

Details for MMP1425 - Protein of unknown function DUF127 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1425

Tuberculist Genomic Region

MMP0588 Diphthine synthase (NCBI)

Details for MMP0588 - Diphthine synthase (NCBI)

GO Terms: GO:0017183, GO:0004164

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0588

Tuberculist Genomic Region

MMP1048 conserved hypothetical protein (NCBI)

Details for MMP1048 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1048

Tuberculist Genomic Region

MMP0610 PUA domain:Queuine/other tRNA-ribosyltransferase:Uncharacterized domain 2:Archaeosine tRNA-ribosyltransferase (NCBI)

Details for MMP0610 - PUA domain:Queuine/other tRNA-ribosyltransferase:Uncharacterized domain 2:Archaeosine tRNA-ribosyltransferase (NCBI)

GO Terms: GO:0008616, GO:0003723, GO:0008479

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0610

Tuberculist Genomic Region

MMP0137 Deoxyhypusine synthase (NCBI)

Details for MMP0137 - Deoxyhypusine synthase (NCBI)

GO Terms: GO:0008612, GO:0050983, GO:0004171

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0137

Tuberculist Genomic Region

MMP0878 Ribonuclease P-related protein (NCBI)

Details for MMP0878 - Ribonuclease P-related protein (NCBI)

GO Terms: GO:0008033, GO:0004526, GO:0004540

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0878

Tuberculist Genomic Region

MMP1361 DNA-directed RNA polymerase subunit B (NCBI)

Details for MMP1361 - DNA-directed RNA polymerase subunit B (NCBI)

GO Terms: GO:0006350, GO:0003902, GO:0003900, GO:0003677, GO:0003899, GO:0003901

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1361

Tuberculist Genomic Region

Displaying 1 - 20 of 20

Motifs

Motif 1: e-value: 5.9 e-value: 990

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0033

LysR family member (NCBI)
 up-regulates 0.30

MMP0033

MMP0907

predicted archaeal transcriptional regulator (NCBI)

MMP1646

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.22

MMP0907

MMP1646

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0257

TATA-binding protein (TBP) (NCBI)
 down-regulates -0.20

MMP0052

MMP0257

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0480

conserved hypothetical protein (NCBI)
 down-regulates -0.18

MMP0052

MMP0480

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0090305 nucleic acid phosphodiester bond hydroly... 4 0.10 2 0.0032
BP GO:0090501 RNA phosphodiester bond hydrolysis 4 0.10 2 0.0032
BP GO:0034641 cellular nitrogen compound metabolic pro... 83 2.16 5 0.0141
BP GO:0016070 RNA metabolic process 12 0.31 2 0.0323

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