Welcome to Network Portal 
Network Portal provides analysis and visualization tools for selected gene regulatory networks to aid researchers in biological discovery and hypothesis development. [ ..read more]
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Organisms
| EGRIN Model | EGRIN2 Model | Species |
|---|---|---|
| Explore | Explore | Escherichia coli K12 |
| Explore | Explore | Halobacterium salinarum NRC-1 |
| Explore | Explore | Mycobacterium tuberculosis H37Rv |
| Explore | Bacillus cereus ATCC14579 | |
| Explore | Bacillus subtilis | |
| Explore | Bacteroides thetaiotaomicron VPI-5482 | |
| Explore | Clostridium acetobutylicum | |
| Explore | Campylobacter jejuni | |
| Explore | Desulfovibrio vulgaris Hildenborough | |
| Explore | Geobacter sulfurreducens | |
| Explore | Methanococcus maripaludis S2 | |
| Explore | Pseudomonas aeruginosa | |
| Explore | Rhodobacter sphaeroides 2.4.1 | |
| Explore | Synechococcus elongatus PCC 7942 | |
| Explore | Corynebacterium glutamicum ATCC 13032 | |
| Explore | Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) | |
| Explore | Clostridioides difficile | |
| Explore | Thalassiosira pseudonana | |
| Explore | Phaeodactylum tricornutum | |
| Explore | Chlamydomonas reinhardtii | |
| Explore | Methylobacterium extorquens AM1 |
Methanococcus maripaludis S2
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 1863 | 57 |  Explore network |
mmp |
Halobacterium salinarum NRC-1
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 2701 | 125 | Explore network |
hal |
Bacteroides_thetaiotaomicron_VPI-5482
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 4902 | 0 | Explore network |
bth |
Clostridium_acetobutylicum
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 3995 | 259 | Explore network |
cac |
Bacillus_cereus_ATCC14579
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 5501 | 376 | Explore network |
bce |
Bacillus_subtilis
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 4313 | 319 | Explore network |
bsu |
Synechococcus elongatus PCC 7942
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 2717 | Pending Inferelator | Explore network |
syf |
Rhodobacter_sphaeroides_2_4_1
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 4341 | 231 | Explore network |
rsp |
Pseudomonas_aeruginosa
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 5646 | 475 | Explore network |
pae |
Escherichia_coli_K12
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 4497 | Pending Inferelator | Explore network |
eco |
Campylobacter_jejuni
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 1711 | 39 | Explore network |
cje |
Geobacter_sulfurreducens
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 3519 | 156 | Explore network |
gsu |
Desulfovibrio vulgaris Hildenborough
| Genes | Transcription Factors | Network | Organism Page |
|---|---|---|---|
| 3661 | 128 | Explore network |
dvu |
Methodology
Network Portal integrates identification of conditionally co-regulated group of genes (Performed using cMonkey) and inference of regulatory influences (performed using Inferelator). In addition, it is integrated with MicrobesOnline for genomic information, RegPrecise for collection of manually curated regulatory inferences, and RegPredict for Regulon Inference by Known Position Weight Matrix (PWM). [ ..read more]
Data Sources
ENIGMA MicrobesOnline RegPrecise NCBI KEGG GO Baliga Lab
Network Portal and associated Gaggle Tools are being developed by Baliga Lab at Institute for Systems Biology as part of the DOE KnowledgeBase efforts.
Quick Search
(Start typing keywords, press ESC to close suggestions)Statistics
| Species | Networks | Version |
|---|---|---|
| 15 | 13 | 0.0.1 |
| Modules | Regulators | Motifs |
| 4678 | 3466 | 9291 |
Updates
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