Regulatory Modules
Displaying 1 - 10 of 170Desulfovibrio vulgaris Hildenborough
| Title | Motif 1 | Motif 2 | Residual | Bicluster Genes | Selected GO Terms |
|---|---|---|---|---|---|
| bicluster_0001 |
3100 |
11000 |
0.41 | DVU0383, DVU0824, DVU0964, DVU1243, DVU1790, DVU1962, DVU2120, DVU2139, DVU2169, DVU2326, DVU2602, DVU2622, DVU2915 | glutamate metabolic process, dicarboxylic acid metabolic process, cellular amino acid catabolic process, organic acid catabolic process, small molecule catabolic process |
| bicluster_0002 |
120 |
7800 |
0.42 | DVU0078, DVU0382, DVU0443, DVU0920, DVU1112, DVU1487, DVU1489, DVU2168, DVU2539, DVU2741, DVU2881 | exonuclease activity, nuclease activity, hydrolase activity, acting on ester bond... |
| bicluster_0003 |
480 |
2300 |
0.40 | DVU0230, DVU0426, DVU1482, DVU1699, DVU1957, DVU2158, DVU2249, DVU2296, DVU2343, DVU2432, DVU2567, DVU3078, DVU3249, DVU3251, DVUA0046 | cell wall organization, cell wall organization or biogenesis, external encapsulating structure organiz..., inorganic anion transmembrane transporte..., anion transmembrane transporter activity |
| bicluster_0004 |
3.1 |
2600 |
0.45 | DVU0483, DVU0595, DVU0662, DVU0663, DVU0664, DVU0725, DVU0812, DVU1013, DVU1212, DVU1629, DVU1839, DVU1874, DVU2324, DVU2439, DVU2467, DVU2468, DVU2469, DVU2974, DVU3283, DVU3316 | sulfur amino acid metabolic process, sulfur amino acid biosynthetic process, serine family amino acid metabolic proce..., cellular amino acid metabolic process, O-acyltransferase activity |
| bicluster_0008 |
0.00000000018 |
0.00000000027 |
0.45 | DVU0252, DVU0268, DVU0472, DVU0473, DVU0553, DVU0630, DVU0916, DVU0939, DVU1015, DVU1155, DVU1285, DVU1637, DVU1638, DVU1639, DVU1646, DVU2145, DVU2146, DVU2725, DVU2726, DVU3080 | O-acyltransferase activity, acetyltransferase activity |
| bicluster_0009 |
12000 |
13000 |
0.47 | DVU0084, DVU0087, DVU0088, DVU0091, DVU0141, DVU0142, DVU0323, DVU0324, DVU0651, DVU0794, DVU1029, DVU1185, DVU1189, DVU1369, DVU1370, DVU1459, DVU1540, DVU1860, DVU1863, DVU2257, DVU2320, DVU2461, DVU2558, DVU3297, DVU2634 | coenzyme metabolic process, cofactor metabolic process, alpha-amino acid biosynthetic process, cellular amino acid biosynthetic process, organonitrogen compound biosynthetic pro... |
| bicluster_0010 |
3.1 |
1500 |
0.48 | DVU0161, DVU0162, DVU0399, DVU0503, DVU0507, DVU0508, DVU0510, DVU0511, DVU0957, DVU1077, DVU1078, DVU1202, DVU1207, DVU1298, DVU1299, DVU1300, DVU1575, DVU1622, DVU2231, DVU2913, DVU2914, DVU2923, DVU3308, DVU3310, DVU3368 | nucleobase-containing compound biosynthe..., cellular nitrogen compound biosynthetic ..., aromatic compound biosynthetic process, ribonucleoside monophosphate biosyntheti..., nucleoside monophosphate biosynthetic pr... |
| bicluster_0011 |
0.1 |
3700 |
0.49 | DVU0170, DVU0729, DVU0820, DVU0821, DVU0822, DVU0912, DVU0937, DVU1121, DVU1263, DVU1773, DVU1774, DVU1811, DVU1812, DVU2107, DVU2117, DVU2264, DVU2304, DVU2345, DVU2585, DVU2615, DVU2616, DVU2676, DVU2833, DVU3045, DVU3107, DVU3155, DVUA0025 | endopeptidase activity, peptidase activity, acting on L-amino ac..., peptidase activity, copper ion binding, hydrolase activity |
| bicluster_0014 |
150 |
1300 |
0.50 | DVU0072, DVU0076, DVU0080, DVU0328, DVU0425, DVU0428, DVU0439, DVU0441, DVU0478, DVU0638, DVU0680, DVU0691, DVU0743, DVU1004, DVU1051, DVU1064, DVU1423, DVU1425, DVU1452, DVU1607, DVU1926, DVU2568, DVU2583, DVU2627, DVU2673, DVU2779, DVU3113, DVU3127, DVU3296 | organonitrogen compound catabolic proces..., single-organism catabolic process, cellular catabolic process, catabolic process, organic substance catabolic process |
| bicluster_0015 |
3200 |
17000 |
0.50 | DVU0022, DVU0117, DVU0286, DVU0539, DVU0621, DVU0681, DVU0807, DVU1163, DVU2023, DVU2041, DVU2502, DVU2661, DVU2736, DVU2906, DVU2994, DVU3000, DVU3007, DVU3128, DVUA0125 | DNA repair, cellular response to DNA damage stimulus, cellular response to stress, DNA metabolic process, copper ion binding |
