Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC4607(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC4607
|Gene||Common Name||Description||Module membership|
|BC0034||BC0034||CsfB protein (NCBI ptt file)||217, 351|
|BC0047||BC0047||Sporulation-specific protease YabG (NCBI ptt file)||217, 393|
|BC0288||BC0288||Ribosomal-protein-alanine acetyltransferase (NCBI ptt file)||217, 351|
|BC0309||BC0309||Methyltransferase (NCBI ptt file)||272, 339|
|BC0401||BC0401||Cystine transport system permease protein (NCBI ptt file)||289, 339|
|BC0480||BC0480||hypothetical protein (NCBI ptt file)||217, 241|
|BC0635||BC0635||Spore germination protein KA (NCBI ptt file)||115, 339|
|BC0638||BC0638||Sodium/proton-dependent alanine carrier protein (NCBI ptt file)||339, 407|
|BC0641||BC0641||Glutamine transport system permease protein glnP (NCBI ptt file)||339, 340|
|BC0642||BC0642||Glutamine transport system permease protein glnP (NCBI ptt file)||339, 340|
|BC0818||BC0818||Oligopeptide transport system permease protein oppB (NCBI ptt file)||217, 351|
|BC0819||BC0819||Oligopeptide transport system permease protein oppC (NCBI ptt file)||162, 217|
|BC0870||BC0870||Multidrug resistance ABC transporter ATP-binding and permease protein (NCBI ptt file)||104, 217|
|BC0871||BC0871||Multidrug resistance ABC transporter ATP-binding and permease protein (NCBI ptt file)||104, 217|
|BC1078||BC1078||Phage infection protein (NCBI ptt file)||54, 339|
|BC1141||BC1141||Spore germination protein PE (NCBI ptt file)||217, 351|
|BC1152||BC1152||Asparagine synthetase (NCBI ptt file)||136, 217|
|BC1243||BC1243||hypothetical protein (NCBI ptt file)||217, 377|
|BC1331||BC1331||Internalin (NCBI ptt file)||217, 419|
|BC1449||BC1449||cAMP-dependent protein kinase regulatory chain (NCBI ptt file)||217, 504|
|BC1568||BC1568||Methionine aminopeptidase (NCBI ptt file)||217, 407|
|BC1830||BC1830||Copper resistance protein A (NCBI ptt file)||123, 217|
|BC2222||BC2222||Oligopeptide transport system permease protein oppB (NCBI ptt file)||253, 339|
|BC2378||BC2378||Transporter, LysE family (NCBI ptt file)||217, 509|
|BC2404||BC2404||hypothetical Cytosolic Protein (NCBI ptt file)||217, 241|
|BC2417||BC2417||hypothetical protein (NCBI ptt file)||123, 217|
|BC2430||BC2430||Methyltransferase (NCBI ptt file)||217, 453|
|BC2465||BC2465||hypothetical protein (NCBI ptt file)||85, 217|
|BC2544||BC2544||ABC transporter permease protein (NCBI ptt file)||217, 351|
|BC2545||BC2545||hypothetical protein (NCBI ptt file)||136, 217|
|BC2651||BC2651||hypothetical protein (NCBI ptt file)||291, 339|
|BC2678||BC2678||hypothetical protein (NCBI ptt file)||339, 459|
|BC2711||BC2711||Bacitracin resistance protein (Putative undecaprenol kinase) (NCBI ptt file)||2, 217|
|BC2741||BC2741||Transporter, Drug/Metabolite Exporter family (NCBI ptt file)||76, 217|
|BC2744||BC2744||hypothetical protein (NCBI ptt file)||158, 217|
|BC2875||BC2875||hypothetical protein (NCBI ptt file)||334, 339|
|BC2972||BC2972||hypothetical protein (NCBI ptt file)||339, 397|
|BC3280||BC3280||hypothetical protein (NCBI ptt file)||136, 217|
|BC3357||BC3357||hypothetical protein (NCBI ptt file)||186, 339|
|BC3474||BC3474||hypothetical protein (NCBI ptt file)||217, 351|
|BC3475||BC3475||hypothetical protein (NCBI ptt file)||3, 217|
|BC3516||BC3516||CDP-abequose synthase (NCBI ptt file)||162, 339|
|BC3593||BC3593||Transcriptional regulator, DeoR family (NCBI ptt file)||217, 351|
|BC3667||BC3667||ABC transporter permease protein (NCBI ptt file)||2, 217|
|BC3733||BC3733||hypothetical protein (NCBI ptt file)||334, 339|
|BC3751||BC3751||hypothetical protein (NCBI ptt file)||334, 339|
|BC3928||BC3928||hypothetical Membrane Spanning Protein (NCBI ptt file)||131, 339|
|BC3967||BC3967||hypothetical protein (NCBI ptt file)||154, 217|
|BC4304||BC4304||hypothetical Cytosolic Protein (NCBI ptt file)||217, 272|
|BC4407||BC4407||Stage V sporulation protein B (NCBI ptt file)||17, 339|
|BC4520||uvrC||excinuclease ABC subunit C (RefSeq)||217, 351|
|BC4607||BC4607||hypothetical protein (NCBI ptt file)||217, 339|
|BC4641||BC4641||hypothetical protein (NCBI ptt file)||154, 217|
|BC4847||BC4847||D-alanyl-D-alanine carboxypeptidase (NCBI ptt file)||217, 361|
|BC4858||BC4858||DnaK suppressor protein (NCBI ptt file)||217, 241|
|BC5217||BC5217||PTS system, lichenan oligosaccharide-specific IIB component (NCBI ptt file)||199, 339|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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