Organism : Bacillus subtilis | Module List :
Regulation information for BSU05090(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for BSU05090
Module neighborhood information for BSU05090
|Gene||Common Name||Description||Module membership|
|BSU00440||veg||hypothetical protein (RefSeq)||94, 115|
|BSU01750||ybbP||hypothetical protein (RefSeq)||38, 265|
|BSU01800||alkA||DNA-3-methyladenine glycosylase (RefSeq)||115, 157|
|BSU03140||tmrB||ATP-binding tunicamycin resistance protein (RefSeq)||94, 115|
|BSU03150||aroK||shikimate kinase (RefSeq)||94, 115|
|BSU03540||ycxB||hypothetical protein (RefSeq)||49, 115|
|BSU03880||yczG||putative transcriptional regulator (ArsR family) (RefSeq)||94, 115|
|BSU04320||ydaO||putative metabolite transporter (RefSeq)||38, 270|
|BSU04610||ydcA||hypothetical protein (RefSeq)||115, 123|
|BSU05060||lrpB||transcriptional regulator (Lrp/AsnC family) (RefSeq)||115, 157|
|BSU05080||yddR||putative metal-dependent hydrolase (RefSeq)||38, 255|
|BSU05090||yddS||putative permease (RefSeq)||38, 115|
|BSU05110||ydeA||putative enzyme (RefSeq)||49, 115|
|BSU05170||ydeE||putative transcriptional regulator (AraC/XylS family) (RefSeq)||115, 157|
|BSU05180||ydeF||putative PLP-dependent transcriptional regulator (RefSeq)||115, 216|
|BSU05200||ydeH||putative integral inner membrane protein (RefSeq)||115, 159|
|BSU05210||ydeI||hypothetical protein (RefSeq)||115, 157|
|BSU05240||ydeL||putative PLP-dependent transcriptional regulator (RefSeq)||115, 291|
|BSU05340||ydfA||putative metal-anion antiporter protein (RefSeq)||14, 38|
|BSU05460||ydfL||putative transcriptional regulator of efflux transporter (RefSeq)||115, 157|
|BSU05640||ydgG||putative transcriptional regulator (MarR family) (RefSeq)||38, 178|
|BSU05650||ydgH||putative membrane component (RefSeq)||38, 178|
|BSU07700||nagP||phosphotransferase system (PTS) N-acetylglucosamine-specific enzyme IICB component (RefSeq)||38, 365|
|BSU08360||yfiQ||putative membrane component involved in biofilm formation (RefSeq)||115, 285|
|BSU09460||ctrA||branched-chain amino acid transporter (RefSeq)||38, 311|
|BSU09500||yhdK||negative regulator of the activity of sigma-M (RefSeq)||38, 44|
|BSU09510||yhdL||negative regulator of the activity of sigma-M (RefSeq)||38, 170|
|BSU09520||sigM||RNA polymerase sigma factor SigM (RefSeq)||38, 193|
|BSU09600||crcBA||camphor resistance protein CrcB (RefSeq)||64, 115|
|BSU09760||yheE||hypothetical protein (RefSeq)||115, 171|
|BSU11510||yjbE||putative transporter component (RefSeq)||64, 115|
|BSU12200||yjiA||hypothetical protein (RefSeq)||115, 157|
|BSU13370||ykoQ||putative metallophosphoesterase (RefSeq)||115, 226|
|BSU13430||ykoX||putative integral inner membrane protein (RefSeq)||38, 89|
|BSU17060||ymzD||putative integral inner membrane protein (RefSeq)||115, 159|
|BSU17290||ebrB||small multidrug efflux transporter (RefSeq)||38, 294|
|BSU17300||ebrA||small multidrug resistance efflux transporter (RefSeq)||38, 44|
|BSU18790||yoaZ||putative factor of the oxidative stress response (RefSeq)||115, 226|
|BSU26580||bltR||transcriptional regulator (RefSeq)||115, 409|
|BSU26590||blt||efflux transporter (RefSeq)||115, 409|
|BSU26600||bltD||spermine/spermidine acetyltransferase (RefSeq)||115, 129|
|BSU26670||gltR||transcriptional regulator (LysR family) (RefSeq)||38, 270|
|BSU26690||brnQ||low-affinity branched-chain amino acid transporter (RefSeq)||38, 327|
|BSU26770||yrdB||putative integral inner membrane protein (RefSeq)||38, 327|
|BSU27090||aapA||d-Serine/d-alanine/glycine permease (RefSeq)||38, 66|
|BSU27140||oatA||peptidoglycan O-acetyltransferase (RefSeq)||38, 270|
|BSU30680||ytjA||hypothetical protein (RefSeq)||64, 115|
|BSU32190||yuzB||hypothetical protein (RefSeq)||96, 115|
|BSU33130||liaI||permease (RefSeq)||19, 115|
|BSU35200||yvkB||putative transcriptional regulator (TetR/AcrR family) (RefSeq)||38, 132|
|BSU35210||yvkA||putative efflux transporter (RefSeq)||38, 409|
|BSU37540||ywhB||4-oxalocrotonate tautomerase (RefSeq)||111, 115|
|BSU37990||ywdE||putative integral inner membrane protein (RefSeq)||38, 111|
|BSU38000||ywdD||putative integral inner membrane protein (RefSeq)||38, 111|
|BSU38120||rodA||factor involved in extension of the lateral walls of the cell (RefSeq)||38, 409|
|BSU38890||yxjN||putative integral inner membrane protein (RefSeq)||38, 233|
|BSU39990||yxaF||transcriptional regulator (RefSeq)||38, 270|
|BSU40140||yydJ||putative permease for export of a regulatory peptide (RefSeq)||36, 115|
|BSU40150||yydI||ABC transporter (ATP-binding protein) (RefSeq)||32, 115|
|BSU40980||yyaB||putative integral inner membrane protein (RefSeq)||115, 291|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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