Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0387(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC0387
|Gene||Common Name||Description||Module membership|
|CAC0058||CAC0058||Hypothetical protein (NCBI ptt file)||21, 324|
|CAC0073||CAC0073||Uncharacterized protein, ortholog of YYBG B.subtilis (NCBI ptt file)||264, 324|
|CAC0117||121||protein cheY homolog (NCBI ptt file)||107, 285|
|CAC0121||cheR||Chemotaxis protein methyltransferase (cheR) (NCBI ptt file)||100, 324|
|CAC0152||CAC0152||Ribosomal-protein-alanine acetyltransferase (acetylating enzyme for N-terminal of ribosomal protein S5) (NCBI ptt file)||265, 285|
|CAC0311||CAC0311||PolyA polymerase (NCBI ptt file)||285, 355|
|CAC0382||levR||Possible transcriptional regulator of levanase operon, AAA-ATPase domain (NtrC family), fused to 2 BglG-like domains, ortholog of B.subtilis levR (NCBI ptt file)||324, 332|
|CAC0383||CAC0383||PTS cellobiose-specific component IIA (NCBI ptt file)||28, 324|
|CAC0384||licB||PTS system, cellobiose-specific component BII (NCBI ptt file)||285, 324|
|CAC0385||CAC0385||Beta-glucosidase (NCBI ptt file)||285, 324|
|CAC0386||licC||PTS cellobiose-specific component IIC (NCBI ptt file)||82, 285|
|CAC0387||CAC0387||Hypothetical protein (NCBI ptt file)||285, 324|
|CAC0533||glvA||Maltose-6'-phosphate glucosidase (glvA) (NCBI ptt file)||284, 324|
|CAC0540||CAC0540||Beta-mannanase ManB-like enzyme, contains ChW-repeats (NCBI ptt file)||264, 324|
|CAC0542||CAC0542||Methyl-accepting chemotaxis protein (NCBI ptt file)||70, 285|
|CAC0644||gerKA||Spore germination protein gerKA (NCBI ptt file)||324, 360|
|CAC0741||CAC0741||Methyl-accepting chemotaxis protein (NCBI ptt file)||24, 285|
|CAC0908||CAC0908||Dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis family 1 (NCBI ptt file)||217, 324|
|CAC1233||chev||Chemotaxis protein CheV ortholog (CheW-like adaptor domain and CheY-like reciever domain) (NCBI ptt file)||93, 285|
|CAC1433||CAC1433||Hypothetical protein (NCBI ptt file)||285, 319|
|CAC2154||flgE||Flagellar hook protein FlgE. (NCBI ptt file)||96, 285|
|CAC2194||CAC2194||Predicted nucleoside-diphosphate sugar epimerase (NCBI ptt file)||96, 285|
|CAC2254||CAC2254||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||100, 285|
|CAC2338||CAC2338||Lysine decarboxylase (NCBI ptt file)||82, 285|
|CAC2488||CAC2488||Uncharacterized conserved protein, YTFE family (NCBI ptt file)||285, 367|
|CAC2740||hisS||Histidyl-tRNA synthetase (NCBI ptt file)||84, 324|
|CAC3156||CAC3156||Uncharacterized conserved protein, YACZ B.subtilis ortholog (NCBI ptt file)||84, 324|
|CAC3271||CAC3271||Transcriptional regulator, AcrR family (NCBI ptt file)||223, 285|
|CAC3272||CAC3272||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||285, 359|
|CAC3281||CAC3281||ABC-type multidrug/protein/lipid transport system, ATPase component (NCBI ptt file)||84, 324|
|CAC3282||CAC3282||ABC-type multidrug/protein/lipid transport system, ATPase component (NCBI ptt file)||9, 324|
|CAC3283||CAC3283||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||9, 324|
|CAC3333||CAC3333||Uncharacterized conserved protein, related to pyruvate formate-lyase activating enzyme (NCBI ptt file)||265, 285|
|CAC3397||CAC3397||Membrane associated methyl-accepting chemotaxis protein (with HAMP domain) (NCBI ptt file)||324, 338|
|CAC3398||CAC3398||Uncharacterized conserved protein, YbhB family (NCBI ptt file)||108, 324|
|CAC3399||CAC3399||Predicted transcriptional regulator (NCBI ptt file)||108, 324|
|CAC3721||CAC3721||Hypothetical secreted protein (NCBI ptt file)||84, 324|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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