Organism : Clostridium acetobutylicum | Module List :
Methyl-accepting chemotaxis protein (NCBI ptt file)
Functional Annotations (5)
|Methyl-accepting chemotaxis protein||cog/ cog|
|signal transducer activity||go/ molecular_function|
|signal transduction||go/ biological_process|
Regulation information for CAC0542(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0542
Module neighborhood information for CAC0542
|Gene||Common Name||Description||Module membership|
|CAC0053||CAC0053||Hypothetical protein (NCBI ptt file)||70, 86|
|CAC0117||121||protein cheY homolog (NCBI ptt file)||107, 285|
|CAC0152||CAC0152||Ribosomal-protein-alanine acetyltransferase (acetylating enzyme for N-terminal of ribosomal protein S5) (NCBI ptt file)||265, 285|
|CAC0311||CAC0311||PolyA polymerase (NCBI ptt file)||285, 355|
|CAC0384||licB||PTS system, cellobiose-specific component BII (NCBI ptt file)||285, 324|
|CAC0385||CAC0385||Beta-glucosidase (NCBI ptt file)||285, 324|
|CAC0386||licC||PTS cellobiose-specific component IIC (NCBI ptt file)||82, 285|
|CAC0387||CAC0387||Hypothetical protein (NCBI ptt file)||285, 324|
|CAC0442||CAC0442||Permease, putative chloride channel (NCBI ptt file)||70, 214|
|CAC0448||feoB||Ferrous iron transport protein B (feoB-2) (NCBI ptt file)||70, 227|
|CAC0525||CAC0525||Sensory transduction histidine kinase (HisKA and HATPase_c domains) (NCBI ptt file)||70, 73|
|CAC0527||CAC0527||Predicted permease, domain duplication (NCBI ptt file)||70, 154|
|CAC0542||CAC0542||Methyl-accepting chemotaxis protein (NCBI ptt file)||70, 285|
|CAC0586||CAC0586||CheX protein (uncharacterized ORF in chemotaxis operon) (NCBI ptt file)||70, 249|
|CAC0741||CAC0741||Methyl-accepting chemotaxis protein (NCBI ptt file)||24, 285|
|CAC0757||CAC0757||Predicted membrane protein (NCBI ptt file)||70, 223|
|CAC1233||chev||Chemotaxis protein CheV ortholog (CheW-like adaptor domain and CheY-like reciever domain) (NCBI ptt file)||93, 285|
|CAC1433||CAC1433||Hypothetical protein (NCBI ptt file)||285, 319|
|CAC1570||bsaA||Glutathione peroxidase (NCBI ptt file)||9, 70|
|CAC1571||CAC1571||Glutathione peroxidase (NCBI ptt file)||70, 214|
|CAC1603||CAC1603||Diverged enzyme related to 2'-5' RNA ligase, ortholog YJCG B.subtilis (NCBI ptt file)||70, 83|
|CAC1966||CAC1966||Surface-layer related glycoprotein (NCBI ptt file)||70, 291|
|CAC2154||flgE||Flagellar hook protein FlgE. (NCBI ptt file)||96, 285|
|CAC2194||CAC2194||Predicted nucleoside-diphosphate sugar epimerase (NCBI ptt file)||96, 285|
|CAC2254||CAC2254||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||100, 285|
|CAC2338||CAC2338||Lysine decarboxylase (NCBI ptt file)||82, 285|
|CAC2488||CAC2488||Uncharacterized conserved protein, YTFE family (NCBI ptt file)||285, 367|
|CAC2541||CAC2541||Reductase/isomerase/elongation factor common domain (NCBI ptt file)||70, 291|
|CAC2545||CAC2545||Hypothetical protein (NCBI ptt file)||70, 326|
|CAC2692||CAC2692||O-Acetyltransferase, from isoleucine patch superfamily (NCBI ptt file)||70, 266|
|CAC2830||CAC2830||Acylphosphatases, ACYP (NCBI ptt file)||70, 92|
|CAC3021||CAC3021||Possible phosphoglycerate mutase (NCBI ptt file)||70, 218|
|CAC3271||CAC3271||Transcriptional regulator, AcrR family (NCBI ptt file)||223, 285|
|CAC3272||CAC3272||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||285, 359|
|CAC3284||CAC3284||Uncharacterized conserved protein, DegV family (NCBI ptt file)||49, 70|
|CAC3333||CAC3333||Uncharacterized conserved protein, related to pyruvate formate-lyase activating enzyme (NCBI ptt file)||265, 285|
|CAC3410||CAC3410||HD-GYP domain (HD superfamily hydrolase) (NCBI ptt file)||70, 72|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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