Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1970(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1970
|Gene||Common Name||Description||Module membership|
|CAC0055||CAC0055||Uncharacterized predicted metal-binding protein, ortholog of Streptomyces (2808777) (NCBI ptt file)||71, 185|
|CAC0160||CAC0160||Predicted acetyltransferase (NCBI ptt file)||185, 345|
|CAC0239||CAC0239||Histidine kinase-like ATPase (NCBI ptt file)||185, 346|
|CAC0394||kdgA||Deoxyphosphogluconate aldolase (gene kdgA) (NCBI ptt file)||83, 326|
|CAC0417||CAC0417||Similar to arsenate reductase (NCBI ptt file)||71, 185|
|CAC0420||CAC0420||Conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase (NCBI ptt file)||185, 247|
|CAC0541||CAC0541||SAM-dependent methyltransferase (NCBI ptt file)||185, 223|
|CAC0597||gerKB||Spore germination protein, gerKB (NCBI ptt file)||115, 185|
|CAC0718||CAC0718||Ortholog ycnD B.subtilis, nitroreductase (NCBI ptt file)||83, 326|
|CAC0747||CAC0747||Secreted protein containing uncharacterized conserved protein of ErfK family (NCBI ptt file)||49, 185|
|CAC0812||CAC0812||Pectate lyase related protein, secreted (NCBI ptt file)||108, 326|
|CAC0851||CAC0851||Ortholog ygiD E.coli (NCBI ptt file)||167, 185|
|CAC0860||CAC0860||Two-component response regulator (NCBI ptt file)||185, 206|
|CAC1018||CAC1018||Predicted membrane protein (NCBI ptt file)||287, 326|
|CAC1040||CAC1040||Predicted amidohydrolases (NCBI ptt file)||185, 346|
|CAC1083||CAC1083||Predicted membrane-associated metal-binding protein (NCBI ptt file)||185, 251|
|CAC1145||CAC1145||Hypothetical protein (NCBI ptt file)||326, 344|
|CAC1161||CAC1161||Predicted ATPase of HSP70 class (NCBI ptt file)||187, 326|
|CAC1198||recJ||Single-stranded-DNA-specific exonuclease (recJ) (NCBI ptt file)||187, 326|
|CAC1424||CAC1424||Zn-dependent hydrolase, glyoxylase II family (NCBI ptt file)||287, 326|
|CAC1490||CAC1490||Hypothetical protein (NCBI ptt file)||185, 259|
|CAC1491||CAC1491||Predicted ATPase (NCBI ptt file)||146, 185|
|CAC1548||trxB||Thioredoxin reductase (NCBI ptt file)||227, 326|
|CAC1557||CAC1557||Predicted acetyltransferase (NCBI ptt file)||1, 185|
|CAC1581||CAC1581||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||185, 259|
|CAC1657||CAC1657||Uncharacterized conserved protein, yisX B.subtilis ortholog (NCBI ptt file)||279, 326|
|CAC1658||CAC1658||Phospholipase D family protein (NCBI ptt file)||73, 326|
|CAC1670||CAC1670||Response regulator (CheY-like receiver domain and DNA-binding HTH domain) (NCBI ptt file)||185, 326|
|CAC1671||CAC1671||Predicted ATPase related to the helicase subunit of the Holliday junction resolvase (NCBI ptt file)||291, 326|
|CAC1672||CAC1672||Rad3-related DNA helicase (NCBI ptt file)||291, 326|
|CAC1970||CAC1970||Hypothetical protein (NCBI ptt file)||185, 326|
|CAC2178||CAC2178||Predicted CDP-4-keto-6-deoxy-D-glucose-3-dehydrase (NCBI ptt file)||326, 336|
|CAC2495||CAC2495||Predicted transcriptional regulator (NCBI ptt file)||258, 326|
|CAC2545||CAC2545||Hypothetical protein (NCBI ptt file)||70, 326|
|CAC2546||CAC2546||Transcriptional regulator, FadR family (NCBI ptt file)||185, 276|
|CAC2684||CAC2684||Sugar kinase, ribokinase family (NCBI ptt file)||83, 326|
|CAC2759||CAC2759||Response regulator (CheY receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||71, 185|
|CAC3321||CAC3321||Uncharacterized protein homolog of yveG B.subtilis (NCBI ptt file)||185, 216|
|CAC3435||CAC3435||Hypothetical protein (NCBI ptt file)||185, 359|
|CAC3478||CAC3478||Predicted membrane protein (NCBI ptt file)||207, 326|
|CAC3516||CAC3516||Membrane-associated histidine kinase with HAMP domain (NCBI ptt file)||261, 326|
|CAC3517||CAC3517||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||217, 326|
|CAC3581||CAC3581||HAD superfamily hydrolase (NCBI ptt file)||185, 289|
|CAC3656||CAC3656||Uncharacterized conserved protein, yaiN/yohL family (NCBI ptt file)||185, 291|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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