Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0160(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0160
Module neighborhood information for CAC0160
|Gene||Common Name||Description||Module membership|
|CAC0055||CAC0055||Uncharacterized predicted metal-binding protein, ortholog of Streptomyces (2808777) (NCBI ptt file)||71, 185|
|CAC0148||CAC0148||Predicted enzyme with TIM-barrel fold (NCBI ptt file)||117, 345|
|CAC0160||CAC0160||Predicted acetyltransferase (NCBI ptt file)||185, 345|
|CAC0177||appB||Oligopeptide transport permease protein (NCBI ptt file)||314, 345|
|CAC0239||CAC0239||Histidine kinase-like ATPase (NCBI ptt file)||185, 346|
|CAC0352||CAC0352||Uncharacterized conserved membrane protein, SANA family (NCBI ptt file)||115, 345|
|CAC0417||CAC0417||Similar to arsenate reductase (NCBI ptt file)||71, 185|
|CAC0420||CAC0420||Conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase (NCBI ptt file)||185, 247|
|CAC0541||CAC0541||SAM-dependent methyltransferase (NCBI ptt file)||185, 223|
|CAC0597||gerKB||Spore germination protein, gerKB (NCBI ptt file)||115, 185|
|CAC0746||CAC0746||Secreted protease metal-dependent protease (NCBI ptt file)||269, 345|
|CAC0747||CAC0747||Secreted protein containing uncharacterized conserved protein of ErfK family (NCBI ptt file)||49, 185|
|CAC0851||CAC0851||Ortholog ygiD E.coli (NCBI ptt file)||167, 185|
|CAC0860||CAC0860||Two-component response regulator (NCBI ptt file)||185, 206|
|CAC0994||CAC0994||Predicted membrane protein (NCBI ptt file)||100, 345|
|CAC0995||CAC0995||Predicted membrane protein (NCBI ptt file)||80, 345|
|CAC1040||CAC1040||Predicted amidohydrolases (NCBI ptt file)||185, 346|
|CAC1083||CAC1083||Predicted membrane-associated metal-binding protein (NCBI ptt file)||185, 251|
|CAC1160||CAC1160||Hypothetical protein (NCBI ptt file)||25, 345|
|CAC1266||CAC1266||Pseudouridylate synthase family protein, yabo B.subtilis ortholog (NCBI ptt file)||67, 345|
|CAC1450||CAC1450||Predicted alpha/beta superfamily hydrolase (NCBI ptt file)||294, 345|
|CAC1490||CAC1490||Hypothetical protein (NCBI ptt file)||185, 259|
|CAC1491||CAC1491||Predicted ATPase (NCBI ptt file)||146, 185|
|CAC1557||CAC1557||Predicted acetyltransferase (NCBI ptt file)||1, 185|
|CAC1581||CAC1581||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||185, 259|
|CAC1592||CAC1592||Predicted permease, YCGR B.subtilis ortholog (NCBI ptt file)||69, 345|
|CAC1670||CAC1670||Response regulator (CheY-like receiver domain and DNA-binding HTH domain) (NCBI ptt file)||185, 326|
|CAC1791||CAC1791||Undecaprenyl pyrophosphate synthase (NCBI ptt file)||282, 345|
|CAC1911||CAC1911||Hypothetical protein (NCBI ptt file)||117, 345|
|CAC1950||CAC1950||Hypothetical protein (NCBI ptt file)||117, 345|
|CAC1970||CAC1970||Hypothetical protein (NCBI ptt file)||185, 326|
|CAC2055||CAC2055||Predicted transcriptional regulator (NCBI ptt file)||158, 345|
|CAC2168||CAC2168||Uncharacterized conserved protein (NCBI ptt file)||258, 345|
|CAC2287||CAC2287||Acyl-CoA reductase LuxC (NCBI ptt file)||73, 345|
|CAC2298||CAC2298||Predicted nucleotidyltransferase (NCBI ptt file)||91, 345|
|CAC2301||mrcB||Membrane carboxypeptidase mrcB (NCBI ptt file)||239, 345|
|CAC2343||CAC2343||LPS biosynthesis O-acetyl transferase (NCBI ptt file)||100, 345|
|CAC2414||CAC2414||Uncharacterized conserved protein, related to alpha-amylase/alpha-mannosidase (NCBI ptt file)||283, 345|
|CAC2546||CAC2546||Transcriptional regulator, FadR family (NCBI ptt file)||185, 276|
|CAC2660||pykA||Pyruvate carboxylase, PYKA (NCBI ptt file)||29, 345|
|CAC2687||recQ||RecQ protein, superfamily II DNA helicase (NCBI ptt file)||113, 345|
|CAC2694||CAC2694||Hypothetical protein (NCBI ptt file)||158, 345|
|CAC2759||CAC2759||Response regulator (CheY receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||71, 185|
|CAC2781||CAC2781||Hypothetical protein (NCBI ptt file)||62, 345|
|CAC2946||CAC2946||Hypothetical protein (NCBI ptt file)||345, 363|
|CAC2961||galT||Galactose-1-phosphate uridyltransferase (NCBI ptt file)||75, 345|
|CAC2988||CAC2988||Uncharacterized conserved protein, YABE B.subtilis ortholog (NCBI ptt file)||267, 345|
|CAC3321||CAC3321||Uncharacterized protein homolog of yveG B.subtilis (NCBI ptt file)||185, 216|
|CAC3424||CAC3424||Transcriptional regulator, RpiR family (NCBI ptt file)||158, 345|
|CAC3435||CAC3435||Hypothetical protein (NCBI ptt file)||185, 359|
|CAC3581||CAC3581||HAD superfamily hydrolase (NCBI ptt file)||185, 289|
|CAC3656||CAC3656||Uncharacterized conserved protein, yaiN/yohL family (NCBI ptt file)||185, 291|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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