Organism : Clostridium acetobutylicum | Module List :
LPS biosynthesis O-acetyl transferase (NCBI ptt file)
Functional Annotations (3)
|Acetyltransferase (isoleucine patch superfamily)||cog/ cog|
|galactoside O-acetyltransferase activity||go/ molecular_function|
|transferase activity, transferring acyl groups||go/ molecular_function|
Regulation information for CAC2343(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2343
Module neighborhood information for CAC2343
|Gene||Common Name||Description||Module membership|
|CAC0121||cheR||Chemotaxis protein methyltransferase (cheR) (NCBI ptt file)||100, 324|
|CAC0148||CAC0148||Predicted enzyme with TIM-barrel fold (NCBI ptt file)||117, 345|
|CAC0160||CAC0160||Predicted acetyltransferase (NCBI ptt file)||185, 345|
|CAC0177||appB||Oligopeptide transport permease protein (NCBI ptt file)||314, 345|
|CAC0352||CAC0352||Uncharacterized conserved membrane protein, SANA family (NCBI ptt file)||115, 345|
|CAC0355||CAC0355||Putative polygalacturonase (pectinase) (NCBI ptt file)||100, 258|
|CAC0456||lonA||ATP-dependent protease (lonA) (NCBI ptt file)||100, 336|
|CAC0746||CAC0746||Secreted protease metal-dependent protease (NCBI ptt file)||269, 345|
|CAC0994||CAC0994||Predicted membrane protein (NCBI ptt file)||100, 345|
|CAC0995||CAC0995||Predicted membrane protein (NCBI ptt file)||80, 345|
|CAC1160||CAC1160||Hypothetical protein (NCBI ptt file)||25, 345|
|CAC1266||CAC1266||Pseudouridylate synthase family protein, yabo B.subtilis ortholog (NCBI ptt file)||67, 345|
|CAC1387||CAC1387||Membrane associated chemotaxis sensory transducer protein (MSP domain and HAMP domain) (NCBI ptt file)||100, 208|
|CAC1403||CAC1403||Zn-dependent hydrolase, glyoxylase II family (NCBI ptt file)||100, 315|
|CAC1450||CAC1450||Predicted alpha/beta superfamily hydrolase (NCBI ptt file)||294, 345|
|CAC1483||CAC1483||Predicted transcriptional regulator (NCBI ptt file)||100, 317|
|CAC1572||CAC1572||Fructose-1,6-bisphosphatase (YYDE B.subtils ortholog) (NCBI ptt file)||100, 114|
|CAC1592||CAC1592||Predicted permease, YCGR B.subtilis ortholog (NCBI ptt file)||69, 345|
|CAC1701||CAC1701||Sensory histidine kinase (with HAMP and PAS domains) (NCBI ptt file)||100, 329|
|CAC1791||CAC1791||Undecaprenyl pyrophosphate synthase (NCBI ptt file)||282, 345|
|CAC1911||CAC1911||Hypothetical protein (NCBI ptt file)||117, 345|
|CAC1950||CAC1950||Hypothetical protein (NCBI ptt file)||117, 345|
|CAC2055||CAC2055||Predicted transcriptional regulator (NCBI ptt file)||158, 345|
|CAC2168||CAC2168||Uncharacterized conserved protein (NCBI ptt file)||258, 345|
|CAC2243||asnB||N-terminal domain of asparagine synthase (NCBI ptt file)||100, 114|
|CAC2254||CAC2254||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||100, 285|
|CAC2287||CAC2287||Acyl-CoA reductase LuxC (NCBI ptt file)||73, 345|
|CAC2298||CAC2298||Predicted nucleotidyltransferase (NCBI ptt file)||91, 345|
|CAC2301||mrcB||Membrane carboxypeptidase mrcB (NCBI ptt file)||239, 345|
|CAC2343||CAC2343||LPS biosynthesis O-acetyl transferase (NCBI ptt file)||100, 345|
|CAC2345||CAC2345||Glycosyltransferase (NCBI ptt file)||100, 279|
|CAC2346||CAC2346||Glycosyltransferase (NCBI ptt file)||3, 100|
|CAC2349||CAC2349||Hypothetical protein (NCBI ptt file)||13, 100|
|CAC2350||CAC2350||Sugar transaminase, involved in dTDP-4-amino-4,6-dideoxyglucose biosynthesis (NCBI ptt file)||100, 137|
|CAC2351||CAC2351||Glycosyltransferase (NCBI ptt file)||100, 256|
|CAC2414||CAC2414||Uncharacterized conserved protein, related to alpha-amylase/alpha-mannosidase (NCBI ptt file)||283, 345|
|CAC2437||CAC2437||Uncharacterized conserved protein (NCBI ptt file)||100, 109|
|CAC2660||pykA||Pyruvate carboxylase, PYKA (NCBI ptt file)||29, 345|
|CAC2687||recQ||RecQ protein, superfamily II DNA helicase (NCBI ptt file)||113, 345|
|CAC2694||CAC2694||Hypothetical protein (NCBI ptt file)||158, 345|
|CAC2781||CAC2781||Hypothetical protein (NCBI ptt file)||62, 345|
|CAC2844||galT||Galactose-1-phosphate uridylyltransferase (NCBI ptt file)||5, 100|
|CAC2846||secA||Preprotein translocase subunit SecA (ATPase, RNA helicase) (NCBI ptt file)||100, 329|
|CAC2946||CAC2946||Hypothetical protein (NCBI ptt file)||345, 363|
|CAC2961||galT||Galactose-1-phosphate uridyltransferase (NCBI ptt file)||75, 345|
|CAC2988||CAC2988||Uncharacterized conserved protein, YABE B.subtilis ortholog (NCBI ptt file)||267, 345|
|CAC3003||thyA||Thymidylate synthase (NCBI ptt file)||100, 258|
|CAC3299||bdhA||NADH-dependent butanol dehydrogenase A (BDH I) (NCBI ptt file)||91, 100|
|CAC3424||CAC3424||Transcriptional regulator, RpiR family (NCBI ptt file)||158, 345|
|CAC3586||cinA||Competence-damage inducible protein, CINA (NCBI ptt file)||79, 100|
|CAC3660||CAC3660||Uncharacterized protein, homolog of Desulfovibrio gigas (gi:6978031) (NCBI ptt file)||100, 317|
|CAC3734||thdF||Predicted GTPase, ThdF family (NCBI ptt file)||5, 100|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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