Organism : Clostridium acetobutylicum | Module List :
Cytochrome P450 family protein, YBDT B.subtilis ortholog (NCBI ptt file)
Functional Annotations (5)
|Cytochrome P450||cog/ cog|
|monooxygenase activity||go/ molecular_function|
|iron ion binding||go/ molecular_function|
|electron transport||go/ biological_process|
|heme binding||go/ molecular_function|
Regulation information for CAC3330(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC3330
Module neighborhood information for CAC3330
|Gene||Common Name||Description||Module membership|
|CAC0133||CAC0133||Hypothetical protein, CF-4 family (NCBI ptt file)||150, 300|
|CAC0144||sfsa||Sugar fermentation-stimulation protein (NCBI ptt file)||154, 363|
|CAC0245||CAC0245||ABC transporter ATP-binding protein (NCBI ptt file)||154, 220|
|CAC0296||csfB||Zn-finger containing protein, csfB B.subtilis homolog (NCBI ptt file)||64, 154|
|CAC0501||bacA||Bacitracin resistance protein (bacA) (NCBI ptt file)||69, 300|
|CAC0502||uvrB||Excinuclease ABC subunit B (helicase subunit of the DNA excision repair complex) (NCBI ptt file)||154, 335|
|CAC0503||uvrA||Excinuclease ABC subunit A (ATP-ase), (uvrA) (NCBI ptt file)||154, 335|
|CAC0513||CAC0513||Uncharacterized conserved protein, similar to B.subtilis yvcL (NCBI ptt file)||41, 154|
|CAC0524||CAC0524||Response regulator (CheY-like and HTH domains) (NCBI ptt file)||154, 230|
|CAC0526||CAC0526||ABC transporter, ATPase component (NCBI ptt file)||154, 230|
|CAC0527||CAC0527||Predicted permease, domain duplication (NCBI ptt file)||70, 154|
|CAC0613||CAC0613||Spore coat protein F (NCBI ptt file)||203, 300|
|CAC0614||CAC0614||Spore coat protein F (NCBI ptt file)||203, 300|
|CAC0717||CAC0717||Predicted membrane protein (NCBI ptt file)||154, 230|
|CAC0748||CAC0748||Nitroreductase family protein (NCBI ptt file)||154, 255|
|CAC0749||CAC0749||HD hydrolase superfamily protein (NCBI ptt file)||154, 291|
|CAC0786||CAC0786||Uncharacterized conserved protein, repeats (NCBI ptt file)||154, 236|
|CAC0787||CAC0787||Uncharacterized conserved protein, repeats (NCBI ptt file)||73, 154|
|CAC0810||hypF||Hydrogenase maturation factor (hypF) (NCBI ptt file)||95, 300|
|CAC0863||CAC0863||Sensory transduction histidine kinase (NCBI ptt file)||39, 300|
|CAC0905||CAC0905||Uncharacterized NAD(FAD)-dependent dehydrogenase (NCBI ptt file)||65, 154|
|CAC0906||CAC0906||Alanyl-tRNA synthetase related protein (NCBI ptt file)||113, 154|
|CAC1004||CAC1004||Predicted membrane protein (NCBI ptt file)||154, 230|
|CAC1423||CAC1423||Predicted dehydrogenase of short-chain alcohol dehydrogenase family, ortholog of YHDF B.subtilis (NCBI ptt file)||118, 300|
|CAC1508||CAC1508||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC1839||CAC1839||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC1985||CAC1985||Hypothetical protein (NCBI ptt file)||279, 300|
|CAC2249||CAC2249||C-terminal domain of asparagine synthase (NCBI ptt file)||114, 300|
|CAC2300||CAC2300||Uncharacterized secreted protein, YunB B.subtilis homolog (NCBI ptt file)||39, 300|
|CAC2438||CAC2438||Predicted phosphatase (NCBI ptt file)||174, 300|
|CAC2582||CAC2582||Uncharacterized conserved membrane protein, YHGE B.subtilis homolog (NCBI ptt file)||39, 300|
|CAC2583||CAC2583||Uncharacterized conserved membrane protein, YHGE B.subtilis homolog (NCBI ptt file)||150, 300|
|CAC2600||CAC2600||Predicted membrane protein (NCBI ptt file)||300, 301|
|CAC2607||CAC2607||Short-chain alcohol dehydrogenase family protein (NCBI ptt file)||154, 230|
|CAC2666||CAC2666||Hypothetical protein (NCBI ptt file)||300, 330|
|CAC2682||CAC2682||Hypothetical protein (NCBI ptt file)||62, 300|
|CAC2683||cotF||Related to spore coat protein F (NCBI ptt file)||62, 300|
|CAC2737||sbcD||DNA repair exonuclease (NCBI ptt file)||154, 230|
|CAC2763||CAC2763||Membrane assosiated methyl-accepting chemotaxis protein with HAMP domain (NCBI ptt file)||154, 230|
|CAC2790||CAC2790||Hypothetical protein (NCBI ptt file)||39, 300|
|CAC2794||CAC2794||Transcriptional regulator, Lrp family (possible nitrite reductase regulator NirD) (NCBI ptt file)||300, 330|
|CAC2796||CAC2796||MoaA/NirJ family Fe-S oxidoreductase (NCBI ptt file)||188, 300|
|CAC2824||CAC2824||N-terminal HKD family nuclease fused to DNA/RNA helicases of superfamily II,conserved in Streptomyces (NCBI ptt file)||154, 247|
|CAC2825||CAC2825||Uncharacterized conserved protein, YQXD B.subtilis ortholog (NCBI ptt file)||154, 230|
|CAC2947||topB||Topoisomerase B (NCBI ptt file)||65, 154|
|CAC3015||CAC3015||Glycosyltransferase (NCBI ptt file)||39, 300|
|CAC3302||gerKC||Spore germination protein GerKC, membrane protein (NCBI ptt file)||154, 230|
|CAC3330||CAC3330||Cytochrome P450 family protein, YBDT B.subtilis ortholog (NCBI ptt file)||154, 300|
|CAC3546||CAC3546||Highly conserved protein containing a domain related to cellulase catalitic domain and a thioredoxin domain (NCBI ptt file)||259, 300|
|CAC3674||CAC3674||Two CBS domain containing protein (NCBI ptt file)||114, 300|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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