Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC3692(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC3692
|Gene||Common Name||Description||Module membership|
|CAC0135||CAC0135||Hypothetical protein, CF-23 family (NCBI ptt file)||13, 247|
|CAC0248||CAC0248||Transposon related protein (NCBI ptt file)||13, 117|
|CAC0273||CAC0273||2-isopropylmalate synthase (NCBI ptt file)||196, 250|
|CAC0325||CAC0325||Uncharacterized membrane protein, homolog of YtaF B.subtilis (NCBI ptt file)||13, 117|
|CAC0450||CAC0450||Response regulator (CheY-like and HTH domains) (NCBI ptt file)||13, 66|
|CAC0451||CAC0451||Sensory transduction histidine kinase (HAMP, HisKA, HATPase domains) (NCBI ptt file)||13, 140|
|CAC0589||birA||Biotin-(acetyl-CoA carboxylase)ligase (NCBI ptt file)||13, 140|
|CAC0646||leuS||Leucyl-tRNA synthetase (NCBI ptt file)||196, 303|
|CAC0675||CAC0675||Hypothetical protein (NCBI ptt file)||80, 196|
|CAC0687||cysE||Serine acetyltransferase (NCBI ptt file)||196, 277|
|CAC0778||CAC0778||ATP-dependent RNA helicase, superfamily II (NCBI ptt file)||13, 66|
|CAC0820||CAC0820||Conserved protein, ortholog YwqG B.subtilis (NCBI ptt file)||13, 66|
|CAC0889||CAC0889||Uncharacterized conserved membrane protein (NCBI ptt file)||196, 303|
|CAC1012||CAC1012||Uncharacterized membrane protein, homolog of YNGA/YWCD B.suntilis (NCBI ptt file)||13, 69|
|CAC1329||CAC1329||Surfactin biosynthesis-related protein, SFP (NCBI ptt file)||196, 262|
|CAC1356||thiH||Thiamine biosynthesis enzyme ThiH (NCBI ptt file)||196, 292|
|CAC1371||CAC1371||Possible kinase, diverged (NCBI ptt file)||13, 55|
|CAC1381||cbiJ/cobK||precorrin-6x reductase (NCBI ptt file)||13, 55|
|CAC1500||CAC1500||Predicted membrane protein (NCBI ptt file)||13, 351|
|CAC1602||CAC1602||Predicted diverged CheY-domain (NCBI ptt file)||196, 214|
|CAC1610||brnQ||Branched-chain amino acid permease (NCBI ptt file)||196, 303|
|CAC1826||CAC1826||Hypothetical protein (NCBI ptt file)||196, 303|
|CAC2348||CAC2348||Glycosyltransferase (NCBI ptt file)||13, 312|
|CAC2349||CAC2349||Hypothetical protein (NCBI ptt file)||13, 100|
|CAC2453||CAC2453||CBS domain containing protein (NCBI ptt file)||13, 346|
|CAC2478||CAC2478||Predicted conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase (NCBI ptt file)||13, 149|
|CAC2552||CAC2552||Predicted transcriptional regulator CRO family (NCBI ptt file)||196, 356|
|CAC2553||CAC2553||Uncharacterized mebrane protein, YOAS B.subtilis ortholog (NCBI ptt file)||196, 356|
|CAC2554||CAC2554||Hypothetical protein (NCBI ptt file)||13, 346|
|CAC2555||CAC2555||Hypothetical protein (NCBI ptt file)||13, 149|
|CAC2782||CAC2782||Predicted permease (NCBI ptt file)||27, 196|
|CAC2783||cysD||O-acetylhomoserine sulfhydrylase (NCBI ptt file)||27, 196|
|CAC2907||CAC2907||Glycosyltransferase (NCBI ptt file)||13, 117|
|CAC2991||metS||Methionyl-tRNA synthetase (NCBI ptt file)||196, 303|
|CAC3091||CAC3091||Fumarate hydratase, subunit A (N-terminal domain of FumA E.coli) class I (NCBI ptt file)||3, 13|
|CAC3240||CAC3240||Predicted membrane protein (NCBI ptt file)||13, 150|
|CAC3265||CAC3265||Predicted membrane protein (NCBI ptt file)||13, 99|
|CAC3587||CAC3587||DNA replication protein DnaD (NCBI ptt file)||13, 287|
|CAC3596||pgsA||Phosphatidylglycerophosphate synthase (NCBI ptt file)||13, 99|
|CAC3618||CAC3618||ABC-type polar amino acid transport system, ATPase component (NCBI ptt file)||80, 196|
|CAC3619||CAC3619||Amino acid ABC transporter, permease component (NCBI ptt file)||80, 196|
|CAC3620||CAC3620||Amino acid (probably glutamine) ABC transporter, periplasmic binding protein component (NCBI ptt file)||80, 196|
|CAC3692||CAC3692||Hypothetical protein (NCBI ptt file)||13, 196|
|CAC3694||CAC3694||TPR-repeat-containing protein (NCBI ptt file)||196, 250|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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